Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB2M34_RS03070 Genome accession   NZ_CP161903
Coordinates   582185..582874 (+) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis strain DYJ24     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 577185..587874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS03045 (AB2M34_03045) - 577517..577972 (-) 456 WP_014481057.1 hypothetical protein -
  AB2M34_RS03050 (AB2M34_03050) - 578021..578476 (-) 456 WP_046160907.1 hypothetical protein -
  AB2M34_RS03055 (AB2M34_03055) - 579083..580075 (-) 993 WP_014481056.1 LCP family protein -
  AB2M34_RS03060 (AB2M34_03060) - 580075..580728 (-) 654 WP_014481055.1 YigZ family protein -
  AB2M34_RS03065 (AB2M34_03065) degS 580945..582102 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  AB2M34_RS03070 (AB2M34_03070) degU 582185..582874 (+) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  AB2M34_RS03075 (AB2M34_03075) fakBA 582972..583817 (+) 846 WP_014481053.1 DegV family protein -
  AB2M34_RS03080 (AB2M34_03080) comFA 583924..585315 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  AB2M34_RS03085 (AB2M34_03085) comFB 585375..585671 (+) 297 WP_003227989.1 late competence protein ComFB -
  AB2M34_RS03090 (AB2M34_03090) comFC 585635..586357 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  AB2M34_RS03095 (AB2M34_03095) yvyF 586430..586849 (+) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  AB2M34_RS03100 (AB2M34_03100) flgM 586930..587196 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB2M34_RS03105 (AB2M34_03105) flgN 587212..587694 (+) 483 WP_014481048.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=1023042 AB2M34_RS03070 WP_014481054.1 582185..582874(+) (degU) [Bacillus subtilis strain DYJ24]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1023042 AB2M34_RS03070 WP_014481054.1 582185..582874(+) (degU) [Bacillus subtilis strain DYJ24]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment