Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AB2M35_RS19270 Genome accession   NZ_CP161902
Coordinates   3611066..3611788 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain DYJ22     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3606066..3616788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M35_RS19235 (AB2M35_19235) fliW 3606206..3606637 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  AB2M35_RS19240 (AB2M35_19240) yviE 3606658..3607233 (-) 576 WP_014481045.1 DUF6470 family protein -
  AB2M35_RS19245 (AB2M35_19245) flgL 3607280..3608176 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  AB2M35_RS19250 (AB2M35_19250) flgK 3608187..3609710 (-) 1524 WP_014481047.1 flagellar hook-associated protein FlgK -
  AB2M35_RS19255 (AB2M35_19255) flgN 3609729..3610211 (-) 483 WP_014481048.1 flagellar protein FlgN -
  AB2M35_RS19260 (AB2M35_19260) flgM 3610227..3610493 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB2M35_RS19265 (AB2M35_19265) yvyF 3610574..3610993 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  AB2M35_RS19270 (AB2M35_19270) comFC 3611066..3611788 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  AB2M35_RS19275 (AB2M35_19275) comFB 3611752..3612048 (-) 297 WP_003227989.1 late competence protein ComFB -
  AB2M35_RS19280 (AB2M35_19280) comFA 3612108..3613499 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  AB2M35_RS19285 (AB2M35_19285) fakBA 3613606..3614451 (-) 846 WP_014481053.1 DegV family protein -
  AB2M35_RS19290 (AB2M35_19290) degU 3614549..3615238 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  AB2M35_RS19295 (AB2M35_19295) degS 3615321..3616478 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=1023021 AB2M35_RS19270 WP_014481051.1 3611066..3611788(-) (comFC) [Bacillus subtilis strain DYJ22]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1023021 AB2M35_RS19270 WP_014481051.1 3611066..3611788(-) (comFC) [Bacillus subtilis strain DYJ22]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment