Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AB2M35_RS13500 Genome accession   NZ_CP161902
Coordinates   2523550..2524317 (-) Length   255 a.a.
NCBI ID   WP_014480292.1    Uniprot ID   -
Organism   Bacillus subtilis strain DYJ22     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2518550..2529317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M35_RS13480 (AB2M35_13480) ppsR 2518725..2519537 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  AB2M35_RS13485 (AB2M35_13485) ccpN 2519563..2520201 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  AB2M35_RS13490 (AB2M35_13490) glyS 2520334..2522373 (-) 2040 WP_014480291.1 glycine--tRNA ligase subunit beta -
  AB2M35_RS13495 (AB2M35_13495) glyQ 2522366..2523253 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  AB2M35_RS13500 (AB2M35_13500) recO 2523550..2524317 (-) 768 WP_014480292.1 DNA repair protein RecO Machinery gene
  AB2M35_RS13505 (AB2M35_13505) yqzL 2524354..2524497 (-) 144 WP_003230053.1 YqzL family protein -
  AB2M35_RS13510 (AB2M35_13510) era 2524645..2525550 (-) 906 WP_003230051.1 GTPase Era -
  AB2M35_RS13515 (AB2M35_13515) - 2525531..2525941 (-) 411 WP_014480293.1 cytidine deaminase -
  AB2M35_RS13520 (AB2M35_13520) unpK 2526060..2526431 (-) 372 WP_014480294.1 diacylglycerol kinase family protein -
  AB2M35_RS13525 (AB2M35_13525) ybeY 2526412..2526885 (-) 474 WP_014480295.1 rRNA maturation RNase YbeY -
  AB2M35_RS13530 (AB2M35_13530) pgpH 2526886..2529021 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=1023002 AB2M35_RS13500 WP_014480292.1 2523550..2524317(-) (recO) [Bacillus subtilis strain DYJ22]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPLKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1023002 AB2M35_RS13500 WP_014480292.1 2523550..2524317(-) (recO) [Bacillus subtilis strain DYJ22]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAGAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGCTCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment