Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB2M35_RS11830 Genome accession   NZ_CP161902
Coordinates   2231783..2232403 (+) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus subtilis strain DYJ22     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2226783..2237403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M35_RS11790 (AB2M35_11790) ptsA 2227915..2228421 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  AB2M35_RS11795 (AB2M35_11795) ypqA 2228559..2228978 (+) 420 WP_014480103.1 Hsp20/alpha crystallin family protein -
  AB2M35_RS11800 (AB2M35_11800) sppG 2228999..2229376 (-) 378 WP_041053169.1 YppG family protein -
  AB2M35_RS11805 (AB2M35_11805) yppF 2229563..2229751 (+) 189 WP_003230690.1 YppF family protein -
  AB2M35_RS11810 (AB2M35_11810) yppE 2229790..2230161 (-) 372 WP_003246080.1 YppE family protein -
  AB2M35_RS11815 (AB2M35_11815) yppD 2230207..2230452 (-) 246 WP_004398488.1 YppD family protein -
  AB2M35_RS11820 (AB2M35_11820) sspM 2230651..2230755 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  AB2M35_RS11825 (AB2M35_11825) yppC 2230780..2231742 (-) 963 WP_033881326.1 DUF2515 domain-containing protein -
  AB2M35_RS11830 (AB2M35_11830) recU 2231783..2232403 (+) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  AB2M35_RS11835 (AB2M35_11835) ponA 2232425..2235169 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  AB2M35_RS11840 (AB2M35_11840) ypoC 2235245..2235739 (-) 495 WP_009967579.1 YpoC family protein -
  AB2M35_RS11845 (AB2M35_11845) nth 2235736..2236395 (-) 660 WP_009967580.1 endonuclease III -
  AB2M35_RS11850 (AB2M35_11850) dnaD 2236414..2237112 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=1022990 AB2M35_RS11830 WP_014480105.1 2231783..2232403(+) (recU) [Bacillus subtilis strain DYJ22]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1022990 AB2M35_RS11830 WP_014480105.1 2231783..2232403(+) (recU) [Bacillus subtilis strain DYJ22]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment