Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB2M35_RS09230 Genome accession   NZ_CP161902
Coordinates   1773340..1774233 (+) Length   297 a.a.
NCBI ID   WP_069837509.1    Uniprot ID   -
Organism   Bacillus subtilis strain DYJ22     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1768340..1779233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M35_RS09210 (AB2M35_09210) - 1769037..1770740 (+) 1704 WP_069837508.1 hypothetical protein -
  AB2M35_RS09215 (AB2M35_09215) ylqH 1770737..1771018 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  AB2M35_RS09220 (AB2M35_09220) sucC 1771191..1772348 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  AB2M35_RS09225 (AB2M35_09225) sucD 1772377..1773279 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  AB2M35_RS09230 (AB2M35_09230) dprA 1773340..1774233 (+) 894 WP_069837509.1 DNA-processing protein DprA Machinery gene
  AB2M35_RS09235 (AB2M35_09235) topA 1774421..1776496 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  AB2M35_RS09240 (AB2M35_09240) trmFO 1776572..1777879 (+) 1308 WP_069837510.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB2M35_RS09245 (AB2M35_09245) xerC 1777947..1778861 (+) 915 WP_014479777.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32972.20 Da        Isoelectric Point: 9.8131

>NTDB_id=1022986 AB2M35_RS09230 WP_069837509.1 1773340..1774233(+) (dprA) [Bacillus subtilis strain DYJ22]
MDQAAACLSICRINQLLSPSHLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKDWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=1022986 AB2M35_RS09230 WP_069837509.1 1773340..1774233(+) (dprA) [Bacillus subtilis strain DYJ22]
TTGGATCAGGCCGCTGCCTGCCTATCGATTTGCAGAATCAATCAATTATTATCCCCATCCCATCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTGGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGATTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACGAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTATTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

97.98

100

0.98
  dprA Lactococcus lactis subsp. cremoris KW2

41.697

91.246

0.38

Multiple sequence alignment