Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AB2M35_RS06090 Genome accession   NZ_CP161902
Coordinates   1185930..1186508 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain DYJ22     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180930..1191508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M35_RS06070 (AB2M35_06070) hemAT 1181450..1182748 (-) 1299 WP_014479367.1 heme-based aerotactic transducer HemAT -
  AB2M35_RS06075 (AB2M35_06075) comW 1182887..1184415 (-) 1529 Protein_1131 FAD-dependent oxidoreductase -
  AB2M35_RS06080 (AB2M35_06080) yhxC 1184519..1185376 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  AB2M35_RS06085 (AB2M35_06085) yhzC 1185404..1185637 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  AB2M35_RS06090 (AB2M35_06090) comK 1185930..1186508 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  AB2M35_RS06095 (AB2M35_06095) yhxD 1186553..1187452 (-) 900 WP_069837408.1 SDR family oxidoreductase -
  AB2M35_RS06100 (AB2M35_06100) yhjA 1187669..1187938 (+) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  AB2M35_RS06105 (AB2M35_06105) yhjB 1187982..1189451 (-) 1470 WP_014479374.1 sodium:solute symporter -
  AB2M35_RS06110 (AB2M35_06110) yhjC 1189448..1189648 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  AB2M35_RS06115 (AB2M35_06115) - 1189847..1190218 (-) 372 WP_014476361.1 hypothetical protein -
  AB2M35_RS06120 (AB2M35_06120) yhjE 1190370..1190993 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  AB2M35_RS06125 (AB2M35_06125) lepB 1190995..1191501 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=1022971 AB2M35_RS06090 WP_003245329.1 1185930..1186508(+) (comK) [Bacillus subtilis strain DYJ22]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1022971 AB2M35_RS06090 WP_003245329.1 1185930..1186508(+) (comK) [Bacillus subtilis strain DYJ22]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment