Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   AB2M35_RS04875 Genome accession   NZ_CP161902
Coordinates   966937..967731 (+) Length   264 a.a.
NCBI ID   WP_014479217.1    Uniprot ID   -
Organism   Bacillus subtilis strain DYJ22     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 961937..972731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M35_RS04845 (AB2M35_04845) sxzA 962776..963807 (+) 1032 WP_003243057.1 iron chelate uptake ABC transporter family permease subunit -
  AB2M35_RS04850 (AB2M35_04850) yfhB 963922..964803 (+) 882 WP_069837383.1 PhzF family phenazine biosynthesis isomerase -
  AB2M35_RS04855 (AB2M35_04855) yfhC 964891..965475 (+) 585 WP_032723010.1 nitroreductase -
  AB2M35_RS04860 (AB2M35_04860) yfhD 965514..965705 (-) 192 WP_003233561.1 YfhD family protein -
  AB2M35_RS04865 (AB2M35_04865) yfhE 965772..965882 (-) 111 WP_003223230.1 YfhE family protein -
  AB2M35_RS04870 (AB2M35_04870) yfhF 965937..966848 (-) 912 WP_041332787.1 TIGR01777 family oxidoreductase -
  AB2M35_RS04875 (AB2M35_04875) recX 966937..967731 (+) 795 WP_014479217.1 recombination regulator RecX Regulator
  AB2M35_RS04880 (AB2M35_04880) yfhH 967733..968047 (+) 315 WP_003244592.1 YfhH family protein -
  AB2M35_RS04885 (AB2M35_04885) yfhI 968190..969383 (+) 1194 WP_003243500.1 MFS transporter -
  AB2M35_RS04890 (AB2M35_04890) sspK 969415..969567 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  AB2M35_RS04895 (AB2M35_04895) yfhJ 969692..969961 (+) 270 WP_003243789.1 YfhJ family protein -
  AB2M35_RS04900 (AB2M35_04900) yfhK 970106..970624 (+) 519 WP_014479218.1 SH3 domain-containing protein -
  AB2M35_RS04905 (AB2M35_04905) spdL 970709..971041 (+) 333 WP_014479219.1 SdpC immunity protein SpdL -
  AB2M35_RS04910 (AB2M35_04910) ephM 971028..971888 (+) 861 WP_014479220.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31029.21 Da        Isoelectric Point: 6.6686

>NTDB_id=1022967 AB2M35_RS04875 WP_014479217.1 966937..967731(+) (recX) [Bacillus subtilis strain DYJ22]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKEFKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAIK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=1022967 AB2M35_RS04875 WP_014479217.1 966937..967731(+) (recX) [Bacillus subtilis strain DYJ22]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGTGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAATTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACGG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATTAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.242

100

0.992

Multiple sequence alignment