Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB1149_RS15460 Genome accession   NZ_CP161897
Coordinates   3102357..3102971 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain C275     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3097357..3107971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1149_RS15445 helD 3097584..3099635 (-) 2052 WP_172750083.1 DNA helicase IV -
  AB1149_RS15450 - 3099761..3100207 (+) 447 WP_003035892.1 YccF domain-containing protein -
  AB1149_RS15455 yccS 3100226..3102379 (+) 2154 WP_032939270.1 YccS family putative transporter -
  AB1149_RS15460 sxy/tfoX 3102357..3102971 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  AB1149_RS15465 sulA 3103188..3103697 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  AB1149_RS15470 ompA 3104055..3105101 (+) 1047 WP_003035883.1 porin OmpA -
  AB1149_RS15475 matP 3105191..3105643 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  AB1149_RS15480 - 3105829..3107589 (+) 1761 WP_172750084.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=1022945 AB1149_RS15460 WP_003035889.1 3102357..3102971(-) (sxy/tfoX) [Citrobacter freundii strain C275]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1022945 AB1149_RS15460 WP_003035889.1 3102357..3102971(-) (sxy/tfoX) [Citrobacter freundii strain C275]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGCATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment