Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   DQM95_RS06670 Genome accession   NZ_LS483397
Coordinates   1287025..1287705 (-) Length   226 a.a.
NCBI ID   WP_012658720.1    Uniprot ID   B9DUQ8
Organism   Streptococcus uberis strain NCTC3858     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1282025..1292705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM95_RS06655 (NCTC3858_01358) sodA 1282998..1283606 (-) 609 WP_037591808.1 superoxide dismutase SodA -
  DQM95_RS06660 (NCTC3858_01359) holA 1283703..1284743 (-) 1041 WP_012658718.1 DNA polymerase III subunit delta -
  DQM95_RS06665 (NCTC3858_01360) comEC/celB 1284786..1287044 (-) 2259 WP_111685979.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQM95_RS06670 (NCTC3858_01361) comEA/celA/cilE 1287025..1287705 (-) 681 WP_012658720.1 helix-hairpin-helix domain-containing protein Machinery gene
  DQM95_RS06675 (NCTC3858_01362) - 1287768..1288508 (-) 741 WP_012658721.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  DQM95_RS06680 (NCTC3858_01363) - 1288631..1289416 (+) 786 WP_111685980.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DQM95_RS06685 (NCTC3858_01364) - 1289457..1289726 (+) 270 WP_012658723.1 GIY-YIG nuclease family protein -
  DQM95_RS06690 (NCTC3858_01365) - 1289748..1291745 (-) 1998 WP_046389518.1 potassium transporter Kup -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25210.87 Da        Isoelectric Point: 5.2220

>NTDB_id=1022804 DQM95_RS06670 WP_012658720.1 1287025..1287705(-) (comEA/celA/cilE) [Streptococcus uberis strain NCTC3858]
MNDITDHIKQFLLSFKEKKLGILLAIVSLVLIICLTFFFKIKEDDKKVTLPRQMNLTENLSTTAQNDREEEKTNPEMETI
MVDIKGAVVKEGVYQLQRNSRVTDAIQIAGGLRDDADPNAINLAQKLSDEAILYVARKGENKSIIDSQGQQSSSIEQGGQ
RDQKVNINKATIEDLRKIPGIGEKRAQEILDARDSKGGFKSIDDLLTISGIGQKTLEKIKNDIIID

Nucleotide


Download         Length: 681 bp        

>NTDB_id=1022804 DQM95_RS06670 WP_012658720.1 1287025..1287705(-) (comEA/celA/cilE) [Streptococcus uberis strain NCTC3858]
ATGAACGATATAACAGATCACATAAAACAATTTTTGCTATCATTCAAAGAAAAGAAACTAGGTATTTTATTAGCTATTGT
TTCTTTAGTTTTGATAATATGTCTAACTTTCTTTTTTAAAATTAAAGAAGACGACAAAAAAGTTACTTTACCAAGACAAA
TGAATCTGACGGAAAATTTGTCAACTACTGCTCAAAACGATAGGGAGGAGGAAAAAACGAATCCCGAAATGGAAACCATT
ATGGTTGATATAAAAGGAGCAGTGGTAAAAGAAGGTGTTTATCAATTACAAAGAAATAGTCGTGTGACAGATGCTATTCA
GATAGCTGGAGGGTTGAGGGATGATGCTGATCCTAATGCAATAAATTTAGCACAAAAATTAAGTGACGAAGCTATCCTAT
ATGTTGCTAGAAAAGGAGAGAACAAATCAATTATTGATTCTCAGGGTCAGCAGTCATCGTCAATAGAACAGGGTGGACAA
AGGGATCAGAAGGTAAACATTAATAAAGCGACAATTGAGGACTTACGAAAGATACCTGGAATAGGTGAAAAAAGAGCGCA
AGAGATACTAGATGCTAGAGATTCAAAAGGTGGGTTTAAAAGTATTGATGACTTATTGACTATCTCTGGGATTGGGCAAA
AAACCTTGGAAAAAATTAAGAATGACATCATTATTGACTAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(81-129)

Helix-hairpin-helix motif (HHH_3)

(163-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DUQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

41.827

92.035

0.385

Multiple sequence alignment