Detailed information NTG1022780

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABU640_RS11685
• Genome accession: NZ_CP161854
• Coordinates: 2594432..2595439 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116735.1
• Uniprot ID: A0A085SEX1
• Organism: Vibrio cholerae strain C3616
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2589432..2600439

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABU640_RS11675 (ABU640_11675)	cysM	2590595..2591482 (+)	888	WP_001279365.1	cysteine synthase CysM	-
ABU640_RS11680 (ABU640_11680)	mutS	2591750..2594338 (+)	2589	WP_339443769.1	DNA mismatch repair protein MutS	-
ABU640_RS11685 (ABU640_11685)	rpoS	2594432..2595439 (-)	1008	WP_000116735.1	RNA polymerase sigma factor RpoS	Regulator
ABU640_RS11690 (ABU640_11690)	nlpD	2595513..2596448 (-)	936	WP_000177561.1	murein hydrolase activator NlpD	-
ABU640_RS11695 (ABU640_11695)	-	2596448..2597074 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ABU640_RS11700 (ABU640_11700)	surE	2597067..2597819 (-)	753	WP_044126957.1	5'/3'-nucleotidase SurE	-
ABU640_RS11705 (ABU640_11705)	truD	2597821..2598906 (-)	1086	WP_108335950.1	tRNA pseudouridine(13) synthase TruD	-
ABU640_RS11710 (ABU640_11710)	ispF	2598936..2599412 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABU640_RS11715 (ABU640_11715)	ispD	2599409..2600107 (-)	699	WP_002051127.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABU640_RS11720 (ABU640_11720)	ftsB	2600104..2600388 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38504.37 Da
• Isoelectric Point: 4.3648

>NTDB_id=1022780 ABU640_RS11685 WP_000116735.1 2594432..2595439(-) (rpoS) [Vibrio cholerae strain C3616]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=1022780 ABU640_RS11685 WP_000116735.1 2594432..2595439(-) (rpoS) [Vibrio cholerae strain C3616]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGACGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

3D structure

• AlphaFold DB: A0A085SEX1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.701	100	0.997