Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ABU640_RS07640 Genome accession   NZ_CP161854
Coordinates   1716482..1717906 (+) Length   474 a.a.
NCBI ID   WP_032470830.1    Uniprot ID   -
Organism   Vibrio cholerae strain C3616     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1711482..1722906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU640_RS07620 (ABU640_07620) - 1711925..1712710 (-) 786 WP_148524045.1 adenosylcobinamide-GDP ribazoletransferase -
  ABU640_RS07625 (ABU640_07625) cobT 1712710..1713735 (-) 1026 WP_187373849.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  ABU640_RS07630 (ABU640_07630) msrB 1714155..1714619 (-) 465 WP_000935883.1 peptide-methionine (R)-S-oxide reductase MsrB -
  ABU640_RS07635 (ABU640_07635) - 1714965..1716338 (+) 1374 WP_043989903.1 L-cystine transporter -
  ABU640_RS07640 (ABU640_07640) sbcB 1716482..1717906 (+) 1425 WP_032470830.1 exodeoxyribonuclease I Machinery gene
  ABU640_RS07645 (ABU640_07645) - 1717938..1718312 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  ABU640_RS07650 (ABU640_07650) - 1718303..1718977 (+) 675 WP_000266239.1 LrgB family protein -
  ABU640_RS07655 (ABU640_07655) cdd 1719147..1720034 (+) 888 WP_001245907.1 cytidine deaminase -
  ABU640_RS07660 (ABU640_07660) - 1720193..1721068 (+) 876 WP_248438091.1 AEC family transporter -
  ABU640_RS07665 (ABU640_07665) purT 1721222..1722397 (+) 1176 WP_001959616.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54499.91 Da        Isoelectric Point: 6.1699

>NTDB_id=1022768 ABU640_RS07640 WP_032470830.1 1716482..1717906(+) (sbcB) [Vibrio cholerae strain C3616]
MQQKHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=1022768 ABU640_RS07640 WP_032470830.1 1716482..1717906(+) (sbcB) [Vibrio cholerae strain C3616]
ATGCAGCAAAAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTGCCCGCCCCTGAGGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCAGAACTCTCCACACCAAACACCACTAGCCTTGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTCACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AACTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTTGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAACAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAACTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCCGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTCTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.945

100

0.989

Multiple sequence alignment