Detailed information NTG1022751

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ABU640_RS01150
• Genome accession: NZ_CP161854
• Coordinates: 251457..252464 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain C3616
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 246457..257464

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABU640_RS01130 (ABU640_01130)	metJ	246461..246778 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
ABU640_RS01135 (ABU640_01135)	-	246889..248166 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
ABU640_RS01140 (ABU640_01140)	rpmE	248474..248692 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
ABU640_RS01145 (ABU640_01145)	priA	248947..251151 (+)	2205	WP_001908529.1	primosomal protein N'	-
ABU640_RS01150 (ABU640_01150)	cytR	251457..252464 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
ABU640_RS01155 (ABU640_01155)	-	252636..253187 (+)	552	WP_032475230.1	SPOR domain-containing protein	-
ABU640_RS01160 (ABU640_01160)	hslV	253324..253881 (+)	558	WP_000208247.1	ATP-dependent protease subunit HslV	-
ABU640_RS01165 (ABU640_01165)	hslU	253947..255278 (+)	1332	WP_096070311.1	HslU--HslV peptidase ATPase subunit	-
ABU640_RS01170 (ABU640_01170)	-	255382..256299 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ABU640_RS01175 (ABU640_01175)	rraA	256374..256889 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=1022751 ABU640_RS01150 WP_000224452.1 251457..252464(+) (cytR) [Vibrio cholerae strain C3616]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=1022751 ABU640_RS01150 WP_000224452.1 251457..252464(+) (cytR) [Vibrio cholerae strain C3616]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGCAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGTATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCACAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTGCGTGCAGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904