Detailed information    

insolico Bioinformatically predicted

Overview


Name   recJ   Type   Machinery gene
Locus tag   DQM37_RS03745 Genome accession   NZ_LS483394
Coordinates   723120..725330 (+) Length   736 a.a.
NCBI ID   WP_111694776.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC10880     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 718120..730330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM37_RS03715 (NCTC10880_00735) - 718267..718443 (-) 177 WP_002984898.1 DUF3042 family protein -
  DQM37_RS03720 (NCTC10880_00736) miaA 718577..719476 (+) 900 WP_002990117.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  DQM37_RS03725 (NCTC10880_00737) hflX 719549..720787 (+) 1239 WP_010922191.1 GTPase HflX -
  DQM37_RS03730 (NCTC10880_00738) - 720780..721415 (+) 636 WP_002990114.1 cystathionine beta-lyase -
  DQM37_RS03735 (NCTC10880_00739) rnz 721430..722359 (+) 930 WP_023609864.1 ribonuclease Z -
  DQM37_RS03740 (NCTC10880_00740) - 722359..723123 (+) 765 WP_111694775.1 SDR family NAD(P)-dependent oxidoreductase -
  DQM37_RS03745 (NCTC10880_00741) recJ 723120..725330 (+) 2211 WP_111694776.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  DQM37_RS03750 (NCTC10880_00742) - 725480..725998 (+) 519 WP_063812345.1 adenine phosphoribosyltransferase -
  DQM37_RS03755 (NCTC10880_00743) - 726079..726762 (+) 684 WP_002984890.1 DnaD domain-containing protein -
  DQM37_RS03760 (NCTC10880_00744) nth 726759..727415 (+) 657 WP_010922193.1 endonuclease III -
  DQM37_RS03765 (NCTC10880_00745) - 727487..728173 (+) 687 WP_002990104.1 tRNA (adenine(22)-N(1))-methyltransferase -
  DQM37_RS03770 (NCTC10880_00746) - 728163..728951 (+) 789 WP_111694777.1 Nif3-like dinuclear metal center hexameric protein -
  DQM37_RS03775 (NCTC10880_00747) - 728991..730097 (+) 1107 WP_023079081.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence


Protein


Download         Length: 736 a.a.        Molecular weight: 82490.37 Da        Isoelectric Point: 4.8138

>NTDB_id=1022693 DQM37_RS03745 WP_111694776.1 723120..725330(+) (recJ) [Streptococcus pyogenes strain NCTC10880]
MIKSKYSWKIKDKKPDDGFFKLAKTKGLTQTAAQLIYDRGIRTEEALDEFLTADLSQLHDPYLLHDMAKAVPRIRQAIEE
GERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFTDGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAIRYAQ
EQEVDVIVTDHHSLPEELPEAFAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLPTDCLDLVAIGTIADMVSLTGENR
VLVKNGLAMLKHTERVGLQELMSLSPIDLEHFNEDAIGFQIAPQLNALGRLDDPNPAIELLTGFDDQEAQAIALMIKKKN
EERKALVQDIFDQAMAMVDPQKPVQVLAQAGWHPGVLGIVAGRIMETIGQTVVVLTIDNGFAKGSARSLEAINIFEALNG
KRELFTAFGGHAGAAGMTLPVDNLEALSDFLCQFVIERGLDQTAKNTLTIDERLSLDDLSLDILKSLDKLAPYGMDHQKP
VFYVKDIRVSQARTIGQDQSHLKFKVSQGKASFDVLAFGQGSQLQEFRQATGLELAVTLSVNHWNGNTSLQFMLVDARVD
GVQLLDLRTKTAKVPEGIPTIEEDPNARVILINDIPEDFKAWRNQFVHKNFDAIYFKNQMKHPYYLTGFGSREQCAKLYK
TIYQFPEFDLRHKLTELSHYLNIEKLLLIKLIQIFEELSFVTIDDGLMTVNPQAQKREISESHIYQDLKELVKFQEIMAL
ASPKEMYDYLVKSNDQ

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=1022693 DQM37_RS03745 WP_111694776.1 723120..725330(+) (recJ) [Streptococcus pyogenes strain NCTC10880]
ATGATTAAATCCAAATATAGCTGGAAAATAAAAGACAAGAAGCCAGATGATGGCTTCTTTAAGCTAGCAAAGACAAAAGG
TCTAACCCAGACCGCCGCTCAGTTGATTTATGATCGAGGGATAAGGACTGAAGAAGCCTTAGATGAGTTTTTAACAGCGG
ACTTGTCTCAACTGCATGATCCTTACTTGCTACATGACATGGCAAAAGCTGTGCCAAGAATTCGTCAAGCTATTGAAGAG
GGCGAACGAATTCTCATTTACGGCGACTATGATGCTGATGGCATGACGTCGGCTTCTATTGTCAAAGAAACCCTAGACAT
GATGGGAGCAGAGCCTTTGGTTTATCTTCCCAACCGCTTTACAGATGGCTATGGCCCCAACCAGAGCGTCTATAAATATT
TTATTGAGCAGGAAGCTGTGTCCCTAATTATCACGGTTGATAATGGCGTGGCCGGACATGAAGCGATTAGATATGCTCAA
GAACAGGAAGTTGATGTCATTGTAACTGACCATCATAGCCTGCCTGAAGAATTGCCAGAAGCCTTTGCCATCATTCATCC
TGAGCATCCTGATGCTGATTATCCCTTTAAACACTTAGCTGGCTGTGGCGTTGCCTTTAAATTGGCAACAGCTTTGCTAG
AAAGTTTACCAACAGACTGTCTAGACTTGGTAGCTATTGGAACCATTGCCGATATGGTAAGCTTGACAGGTGAAAACCGT
GTTTTAGTCAAAAATGGTCTGGCCATGCTCAAACACACCGAAAGAGTGGGCTTGCAGGAGTTGATGTCCTTATCTCCTAT
TGATTTGGAACATTTTAATGAAGACGCCATTGGCTTTCAGATTGCTCCGCAATTAAATGCTTTAGGGCGCTTAGATGACC
CTAATCCAGCCATTGAGCTACTGACGGGCTTTGATGACCAAGAAGCTCAAGCGATTGCCTTGATGATTAAGAAAAAAAAT
GAAGAGCGTAAAGCCTTAGTCCAAGACATTTTTGATCAAGCGATGGCTATGGTTGATCCTCAAAAACCTGTTCAAGTCTT
GGCACAAGCTGGCTGGCATCCTGGTGTTCTGGGGATTGTCGCTGGTCGTATCATGGAAACTATTGGACAAACGGTCGTCG
TTTTGACCATTGATAATGGCTTTGCAAAAGGCTCGGCCAGAAGTTTAGAAGCTATTAATATTTTTGAAGCCTTAAATGGC
AAGCGTGAGTTATTTACAGCCTTTGGGGGACATGCTGGTGCAGCAGGAATGACCCTGCCCGTTGACAACTTGGAAGCTCT
TTCAGACTTTCTTTGTCAGTTTGTGATAGAACGTGGCTTAGATCAGACTGCCAAAAATACGTTAACTATTGATGAAAGAC
TGTCTTTGGACGACCTTAGCCTTGATATTTTAAAGAGTTTAGATAAATTAGCCCCTTATGGGATGGATCATCAAAAGCCG
GTCTTTTATGTCAAGGACATAAGAGTTAGTCAAGCGCGTACCATAGGGCAAGACCAGAGCCATCTTAAATTTAAAGTCAG
TCAGGGCAAGGCTTCCTTTGACGTACTGGCTTTTGGTCAAGGAAGTCAACTGCAAGAGTTCCGACAAGCTACTGGTTTAG
AATTAGCAGTTACCTTATCTGTCAACCATTGGAATGGGAACACGAGTCTCCAATTCATGTTAGTAGATGCTCGTGTTGAC
GGAGTGCAACTTCTTGATTTAAGGACAAAAACAGCCAAAGTTCCTGAAGGTATTCCGACTATTGAAGAAGACCCAAATGC
CAGAGTCATTCTGATTAATGACATCCCTGAAGATTTCAAAGCCTGGCGCAACCAGTTTGTTCACAAGAATTTTGACGCCA
TCTATTTTAAAAATCAGATGAAACATCCTTATTATTTAACAGGATTTGGCAGCAGAGAGCAGTGTGCCAAGCTCTACAAA
ACCATCTATCAGTTTCCTGAATTTGATTTACGGCATAAATTGACAGAGTTGAGTCACTATTTAAACATAGAAAAACTTTT
ACTGATTAAGTTGATTCAAATTTTTGAAGAGTTGTCTTTTGTGACGATTGACGATGGGCTGATGACGGTTAACCCCCAAG
CGCAAAAACGAGAGATTTCAGAGAGCCACATTTACCAAGACTTAAAAGAATTGGTGAAATTTCAAGAAATCATGGCTTTG
GCTAGCCCGAAAGAGATGTATGATTATTTGGTGAAATCAAACGATCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

62.873

100

0.63

  recJ Bacillus subtilis subsp. subtilis str. 168

34.738

100

0.37