Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DUT67_RS19515 Genome accession   NZ_CP161826
Coordinates   4340069..4341451 (+) Length   460 a.a.
NCBI ID   WP_113626381.1    Uniprot ID   -
Organism   Pectobacterium peruviense strain A350-S18-N16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4335069..4346451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUT67_RS19495 (DUT67_19495) prfC 4335349..4336938 (-) 1590 WP_113626378.1 peptide chain release factor 3 -
  DUT67_RS19500 (DUT67_19500) - 4337230..4338168 (+) 939 WP_113626379.1 hypothetical protein -
  DUT67_RS19505 (DUT67_19505) - 4338222..4338917 (-) 696 WP_048258508.1 YtjB family periplasmic protein -
  DUT67_RS19510 (DUT67_19510) serB 4339074..4340051 (+) 978 WP_113626380.1 phosphoserine phosphatase -
  DUT67_RS19515 (DUT67_19515) radA 4340069..4341451 (+) 1383 WP_113626381.1 DNA repair protein RadA Machinery gene
  DUT67_RS19520 (DUT67_19520) nadR 4341582..4342835 (+) 1254 WP_048258505.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  DUT67_RS19525 (DUT67_19525) - 4342832..4343473 (-) 642 WP_113626382.1 5-formyltetrahydrofolate cyclo-ligase -
  DUT67_RS19535 (DUT67_19535) zapA 4343772..4344101 (-) 330 WP_048258503.1 cell division protein ZapA -
  DUT67_RS19540 (DUT67_19540) - 4344294..4344881 (+) 588 WP_048258502.1 YecA family protein -
  DUT67_RS19545 (DUT67_19545) pepP 4344988..4346313 (+) 1326 WP_048258501.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49535.12 Da        Isoelectric Point: 7.1935

>NTDB_id=1022676 DUT67_RS19515 WP_113626381.1 4340069..4341451(+) (radA) [Pectobacterium peruviense strain A350-S18-N16]
MAKAIKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FLEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQTLCKLSEQMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFTRAIVPHANMPKKAPASMQVFGVKKLADALALLDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1022676 DUT67_RS19515 WP_113626381.1 4340069..4341451(+) (radA) [Pectobacterium peruviense strain A350-S18-N16]
GTGGCAAAAGCCATCAAACGGGCGTTTGTATGTAATGAATGCGGGGCCGACTATCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGCCACGCCTGGAACACCATTACCGAAGTTCGCCTGGCATCGGCGTCCGTATCACGTTCCGACCGTCTCACCGGCTATG
CGGGTGAAAGTGCTGGCGTCAGCCGGGTGCAAAAGCTCTCAGAAATCAGCCTTGAAGCCCTGCCTCGCTTTTCCACTGGC
TTTCTGGAGTTTGACCGCGTTCTGGGCGGCGGCGTCGTTCCGGGCAGCGCCATTCTAATCGGCGGTAGCCCCGGCGCAGG
TAAGAGTACGCTGCTGCTGCAAACACTCTGCAAGCTGTCAGAACAGATGAAAACCCTGTACGTCACTGGGGAAGAATCAT
TGCAGCAGGTGGCGATGCGGGCACACAGACTCAATCTGCCAACGCAGAATCTCAACATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAAGAACAGCCGAAGTTGATGGTCATCGACTCCATTCAGGTCATGCACCTCGCCGATAT
TCAATCTTCTCCCGGCAGCGTGGCGCAGGTGCGTGAAACCGCTGCCTACCTGACGCGCTTCGCTAAAACGCGCGGCGTCG
CCATCGTGATGGTCGGCCACGTCACCAAAGACGGTTCGCTCGCCGGGCCGAAAGTCTTGGAACACTGCATTGACTGCTCC
GTGCTGCTGGACGGCGATGCCGATTCGCGCTTTCGCACGCTGCGCAGCCATAAAAACCGTTTCGGTGCCGTTAACGAGCT
AGGTGTGTTCGCCATGACGGAGCAAGGACTGCGCGAGATCAGCAATCCGTCAGCCATTTTCCTCAGTCGTGGAGACGAAG
TGACGTCTGGCAGTTCGGTCATGGTGGTGTGGGAAGGTACGCGTCCGCTGCTGGTCGAGATTCAGGCTTTGGTTGATCAA
TCGATGATGGCTAATCCGCGTCGCGTTGCGGTTGGGCTGGAGCAAAACCGATTGGCGATCCTGCTAGCGGTACTGCATCG
CCACGGCGGCTTGCAAATGTCGGATCAGGATGTGTTCGTGAATGTCGTTGGCGGCGTCAAAGTGACCGAAACCAGCGCCG
ACCTGGCACTGCTGCTATCGCTGGTTTCCAGCTTCCGCGATCGCCCACTGCCGCAGGATCTGGTCATTTTCGGTGAAGTC
GGCTTGGCGGGCGAAATTCGTCCGGTTCCCAGCGGCCAAGAGCGGATTACCGAAGCAGCCAAGCATGGCTTCACCCGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCAGCCAGTATGCAGGTATTTGGCGTGAAAAAGCTGGCCGACGCGC
TGGCGCTCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(89-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.043

100

0.48
  radA Streptococcus mitis NCTC 12261

43.202

99.13

0.428
  radA Streptococcus mitis SK321

43.202

99.13

0.428
  radA Streptococcus pneumoniae Rx1

43.202

99.13

0.428
  radA Streptococcus pneumoniae D39

43.202

99.13

0.428
  radA Streptococcus pneumoniae R6

43.202

99.13

0.428
  radA Streptococcus pneumoniae TIGR4

43.202

99.13

0.428

Multiple sequence alignment