Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   DQM65_RS06375 Genome accession   NZ_LS483392
Coordinates   1258788..1260164 (+) Length   458 a.a.
NCBI ID   WP_021035306.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC11931     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1253788..1265164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM65_RS06350 (NCTC11931_01272) - 1254508..1254948 (+) 441 WP_005653243.1 DoxX family protein -
  DQM65_RS06355 (NCTC11931_01273) - 1254987..1255274 (+) 288 WP_005671572.1 hypothetical protein -
  DQM65_RS06360 (NCTC11931_01274) - 1255335..1256258 (+) 924 WP_005623843.1 DUF692 domain-containing protein -
  DQM65_RS06365 (NCTC11931_01275) - 1256248..1256964 (+) 717 WP_172454819.1 DUF2063 domain-containing protein -
  DQM65_RS06370 (NCTC11931_01276) - 1257286..1258332 (+) 1047 WP_111691553.1 CYTH domain-containing protein -
  DQM65_RS06375 (NCTC11931_01277) radA/sms 1258788..1260164 (+) 1377 WP_021035306.1 DNA repair protein RadA Machinery gene
  DQM65_RS06380 (NCTC11931_01278) lrp 1260244..1260723 (+) 480 WP_005653255.1 leucine-responsive transcriptional regulator Lrp -
  DQM65_RS06385 (NCTC11931_01279) - 1260725..1263484 (+) 2760 WP_111691554.1 DNA translocase FtsK -
  DQM65_RS06390 (NCTC11931_01280) lolA 1263502..1264119 (+) 618 WP_050847573.1 outer membrane lipoprotein chaperone LolA -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49434.96 Da        Isoelectric Point: 8.1109

>NTDB_id=1022641 DQM65_RS06375 WP_021035306.1 1258788..1260164(+) (radA/sms) [Haemophilus influenzae strain NCTC11931]
MAKATKTAYVCNDCGAEFSRWQGQCSACKAWNTITEVRLISTAKSKNDRFSGYAGETQAKIQTLSEISLQETPRFSSGFN
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLAKNMTALYVTGEESLQQVAMRASRLGLSNDQLKMLSETSVEQI
CNLADQLKPQIIVVDSIQVMHLADIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDCSLL
LEGEADSRYRTLRSHKNRFGAVNELGVFGMTEQGLREVKNPSAIFLSRGDEITSGSSVMVLWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEQNRLSLLLAVLHRHGGLQMADQDVFVNVVGGVKVSETSADLALLLALISSFRNRPLPQDLVIFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIVPFGNKPKSAVENMQVFTVKKLTDALAVLDNL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1022641 DQM65_RS06375 WP_021035306.1 1258788..1260164(+) (radA/sms) [Haemophilus influenzae strain NCTC11931]
ATGGCTAAAGCCACGAAAACAGCTTATGTATGTAACGATTGTGGTGCGGAGTTTTCTCGTTGGCAAGGGCAATGTTCAGC
TTGCAAAGCGTGGAATACAATCACGGAAGTGCGGTTAATTTCCACAGCAAAATCAAAAAATGATCGTTTTAGTGGCTATG
CGGGGGAAACTCAGGCAAAAATTCAAACCCTTTCTGAAATTAGTTTGCAAGAAACACCACGTTTTTCCAGTGGCTTTAAT
GAATTAGATCGGGTATTGGGCGGTGGGATCGTACCGGGCAGTGCGATTTTAATTGGTGGGCATCCTGGTGCAGGGAAAAG
TACCTTGTTATTACAGGTCATGTGTGGTTTAGCGAAAAATATGACCGCACTTTATGTGACGGGAGAGGAATCGTTACAAC
AGGTTGCGATGCGTGCAAGTCGATTGGGATTGTCAAACGATCAATTAAAAATGTTGTCAGAAACCTCTGTGGAACAGATT
TGTAATTTGGCGGATCAGTTAAAACCGCAAATTATAGTGGTAGACTCTATCCAAGTAATGCATCTGGCGGATATTCAATC
ATCGCCAGGCAGTGTGGCACAAGTGCGTGAATGTGCTTCTTTCCTCACTCGTTATGCGAAAACTCGCCAAGTCGCCATTA
TTATGGTGGGGCATGTAACGAAAGACGGAACCCTTGCAGGGCCGAAAGTGTTAGAGCATGCTATTGATTGTTCATTACTA
TTAGAAGGCGAGGCCGATTCTCGCTATCGTACTTTGCGTAGCCATAAAAACCGTTTTGGTGCAGTGAATGAATTAGGTGT
ATTTGGTATGACCGAACAAGGTTTGCGAGAAGTGAAAAATCCATCGGCGATCTTTTTAAGTCGTGGGGATGAAATTACAT
CAGGCAGTTCTGTTATGGTACTTTGGGAGGGTACTCGCCCTCTTTTAGTTGAAATTCAAGCTTTAGTAGATCATTCAATG
TTGGCGAATCCTCGCCGTGTTGCGGTGGGATTAGAGCAAAATCGTTTGTCGTTGTTATTGGCGGTTTTACATAGACACGG
AGGTTTGCAAATGGCGGATCAAGATGTCTTTGTAAATGTCGTTGGTGGTGTAAAAGTTAGTGAAACAAGTGCGGATTTAG
CCTTATTGCTTGCGTTAATTTCTAGTTTCCGTAATCGCCCTTTGCCGCAAGATTTAGTGATTTTTGGCGAAGTTGGATTA
GCGGGAGAAATTCGTCCTGTGCCAAGTGGACAGGAACGTATTAGCGAGGCTGCAAAACACGGTTTTAAACGTGCTATTGT
TCCTTTTGGTAATAAGCCGAAAAGTGCGGTCGAAAATATGCAGGTTTTTACTGTGAAAAAACTCACGGATGCGCTCGCTG
TGTTAGATAATTTATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)

AAA domain (AAA_25)

(80-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.059

100

0.472
  radA Streptococcus mitis NCTC 12261

43.488

98.908

0.43
  radA Streptococcus mitis SK321

43.488

98.908

0.43
  radA Streptococcus pneumoniae Rx1

44.988

93.668

0.421
  radA Streptococcus pneumoniae D39

44.988

93.668

0.421
  radA Streptococcus pneumoniae R6

44.988

93.668

0.421
  radA Streptococcus pneumoniae TIGR4

44.988

93.668

0.421