Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AB1395_RS09260 Genome accession   NZ_CP161815
Coordinates   1841212..1841928 (+) Length   238 a.a.
NCBI ID   WP_218653758.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SS-15     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1836212..1846928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1395_RS09245 (AB1395_09245) - 1836287..1837024 (+) 738 WP_104968664.1 GntR family transcriptional regulator -
  AB1395_RS09250 (AB1395_09250) treC 1837203..1838828 (-) 1626 WP_218653756.1 alpha,alpha-phosphotrehalase -
  AB1395_RS09255 (AB1395_09255) treP 1838975..1841011 (-) 2037 WP_218653757.1 PTS system trehalose-specific EIIBC component -
  AB1395_RS09260 (AB1395_09260) treR 1841212..1841928 (+) 717 WP_218653758.1 trehalose operon repressor Regulator
  AB1395_RS09265 (AB1395_09265) - 1841963..1843120 (-) 1158 WP_218653759.1 glycerate kinase -
  AB1395_RS09270 (AB1395_09270) - 1843300..1844940 (+) 1641 WP_367783266.1 phosphoenolpyruvate carboxykinase (ATP) -
  AB1395_RS09275 (AB1395_09275) - 1845068..1845712 (-) 645 WP_218653761.1 glutamate racemase -
  AB1395_RS09280 (AB1395_09280) - 1845717..1845962 (-) 246 WP_367783267.1 hypothetical protein -
  AB1395_RS09285 (AB1395_09285) dtd 1846052..1846495 (-) 444 WP_218653763.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27351.33 Da        Isoelectric Point: 7.2016

>NTDB_id=1022611 AB1395_RS09260 WP_218653758.1 1841212..1841928(+) (treR) [Streptococcus pluranimalium strain SS-15]
MKKYEKVFRNLETAINQGIYQVNDYLPTEEELAKEYAVSRDTIRKALKLLAEHGLIQKRQGSGSQIIKHERINFPVSALT
SFQEIAQAQGMATTTNVIAIDKLIVDGKMSELTGFPPKSHVWRITRQRVMEGMASVLDIDYLLTTFVPEIDRSIAEKSIY
DYLENHLHLMIDLAEKEITIDQTNQQDSILLDLAGEHHVVSIKSKVFLTNGQQFQFTESRHKLDKFRFVDFAKRRPAN

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1022611 AB1395_RS09260 WP_218653758.1 1841212..1841928(+) (treR) [Streptococcus pluranimalium strain SS-15]
ATGAAAAAGTATGAGAAAGTTTTCCGAAATTTAGAGACTGCTATTAACCAAGGAATCTACCAAGTTAACGACTATTTACC
AACCGAAGAAGAGTTGGCTAAAGAGTATGCTGTCAGCCGAGATACCATTCGAAAAGCCTTAAAGCTCCTGGCAGAACACG
GACTTATTCAAAAACGTCAAGGTAGTGGCTCACAGATCATCAAGCATGAGCGCATTAACTTTCCTGTTTCAGCTCTTACC
AGCTTTCAGGAAATCGCCCAAGCGCAAGGGATGGCAACGACAACTAATGTCATCGCTATCGACAAACTCATTGTTGATGG
GAAGATGTCAGAACTAACTGGTTTCCCACCAAAGAGTCATGTCTGGCGTATCACGCGCCAACGCGTGATGGAAGGGATGG
CATCTGTCCTTGATATTGACTACTTATTGACGACTTTTGTTCCTGAAATCGATCGTTCCATTGCGGAGAAATCCATTTAT
GATTATTTGGAAAACCACCTGCACCTCATGATTGATCTAGCTGAAAAAGAAATCACCATCGACCAGACCAATCAGCAAGA
CAGTATTCTTCTGGACTTAGCAGGTGAGCATCATGTTGTTTCCATCAAGTCCAAAGTCTTTCTCACCAATGGTCAACAAT
TTCAATTCACCGAAAGCCGGCACAAATTGGATAAATTTAGATTTGTAGATTTTGCTAAAAGGAGACCTGCAAATTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(88-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.957

98.319

0.639

Multiple sequence alignment