Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB1395_RS08530 Genome accession   NZ_CP161815
Coordinates   1678230..1679591 (-) Length   453 a.a.
NCBI ID   WP_115130841.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SS-15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1673230..1684591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1395_RS08500 (AB1395_08500) rpsI 1674011..1674403 (-) 393 WP_017769585.1 30S ribosomal protein S9 -
  AB1395_RS08505 (AB1395_08505) rplM 1674430..1674876 (-) 447 WP_018380541.1 50S ribosomal protein L13 -
  AB1395_RS08510 (AB1395_08510) - 1675050..1675910 (-) 861 WP_218653666.1 DegV family protein -
  AB1395_RS08515 (AB1395_08515) - 1676024..1676539 (-) 516 WP_218653667.1 NYN domain-containing protein -
  AB1395_RS08520 (AB1395_08520) rlmB 1676559..1677308 (-) 750 WP_218653668.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AB1395_RS08525 (AB1395_08525) - 1677444..1678169 (+) 726 WP_367783240.1 MerR family transcriptional regulator -
  AB1395_RS08530 (AB1395_08530) radA 1678230..1679591 (-) 1362 WP_115130841.1 DNA repair protein RadA Machinery gene
  AB1395_RS08535 (AB1395_08535) - 1679607..1680056 (-) 450 WP_104968528.1 dUTP diphosphatase -
  AB1395_RS08540 (AB1395_08540) - 1680127..1681404 (-) 1278 WP_218653669.1 S41 family peptidase -
  AB1395_RS08545 (AB1395_08545) - 1681486..1682892 (-) 1407 WP_218653670.1 PTS transporter subunit EIIC -
  AB1395_RS08550 (AB1395_08550) - 1682889..1684529 (-) 1641 WP_218654438.1 alpha-glucosidase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49537.80 Da        Isoelectric Point: 6.5143

>NTDB_id=1022610 AB1395_RS08530 WP_115130841.1 1678230..1679591(-) (radA) [Streptococcus pluranimalium strain SS-15]
MAKKKSSFVCQECGYNSPKYLGRCPNCSAWSSFVEEVEVQEVKNARVSLTGEKTRPTKLKDVDSINYARTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANRGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQNIRAEIE
KIKPDFLIIDSIQTIMSPEVSSVQGSVSQVREVTAELMNLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVQVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQESFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLQGIDIPNNIQVIGVSTVGEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1022610 AB1395_RS08530 WP_115130841.1 1678230..1679591(-) (radA) [Streptococcus pluranimalium strain SS-15]
ATCGCTAAGAAAAAATCGAGTTTTGTCTGTCAAGAGTGCGGTTATAACTCACCAAAATACTTGGGACGTTGTCCCAACTG
CTCGGCTTGGTCTTCCTTTGTCGAAGAAGTAGAGGTACAAGAGGTCAAAAATGCTCGCGTCAGTCTAACAGGTGAAAAAA
CACGTCCAACCAAGCTAAAAGATGTGGATTCTATCAACTATGCCCGTACTAAAACGGACATGGACGAATTTAACCGAGTG
TTAGGTGGGGGTGTTGTTCCAGGCAGTCTTGTCTTAATCGGTGGTGATCCCGGTATTGGGAAGTCAACGTTACTCCTCCA
AGTATCAACACAACTTGCCAATCGTGGAACAGTGCTCTATGTTTCTGGGGAAGAATCAGCAGAGCAGATAAAGCTACGCA
GTGAGCGTCTAGGTGATATTGATAATGAGTTTTACCTTTATGCCGAGACCAACATGCAGAATATCCGAGCGGAGATTGAA
AAAATCAAGCCAGATTTTCTTATTATTGACTCTATCCAAACTATTATGAGTCCAGAGGTTTCAAGTGTGCAGGGTTCGGT
ATCTCAAGTTCGAGAGGTTACTGCAGAGCTGATGAATTTAGCTAAGACCAATAATATTGCTACCTTTATCGTTGGTCATG
TAACCAAGGAAGGAACTCTAGCCGGACCTCGTATGCTGGAACACATGGTAGATACGGTGCTTTATTTTGAAGGGGAACGC
CATCATACCTTCCGTATCCTTCGTGCCGTCAAAAACCGTTTTGGTTCTACCAATGAAATTGGGATATTCGAGATGCAGTC
TGGTGGTTTGGTTCAAGTTTTAAATCCTAGCCAAGTCTTTTTAGAAGAGCGTTTAGATGGAGCGACAGGATCAGCTATTG
TCGTTACCATGGAGGGTTCTCGTCCTATTTTGGCGGAGGTTCAAGCTCTTGTGACGCCAACTGTTTTTGGAAATGCCAAA
CGTACGACCACAGGGCTAGATTTTAATCGGGTCAGTTTGATTATGGCGGTTCTTGAAAAACGATGCGGTTTGCTGCTGCA
GAATCAGGATGCCTACCTCAAGTCAGCGGGTGGCGTAAAACTGGATGAGCCAGCAATAGACCTTGCTGTCGCGGTAGCCA
TTGCTTCAAGTTACAAAGAAAAACCAACCAACCCACAAGAATCCTTTATCGGAGAAATTGGCTTAACAGGTGAAATTCGT
CGCGTAACCCGCATCGAACAACGTATCAATGAAGCTGCCAAGTTGGGCTTCACCAAAATCTACGCCCCTAAAAATTCCCT
CCAAGGCATTGATATCCCGAATAATATCCAAGTTATCGGTGTCTCAACCGTCGGAGAAGTTCTGAAAAAAGTGTTTGCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(68-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.962

100

0.89
  radA Streptococcus pneumoniae D39

88.962

100

0.89
  radA Streptococcus pneumoniae R6

88.962

100

0.89
  radA Streptococcus pneumoniae TIGR4

88.962

100

0.89
  radA Streptococcus mitis SK321

88.962

100

0.89
  radA Streptococcus mitis NCTC 12261

88.742

100

0.887
  radA Bacillus subtilis subsp. subtilis str. 168

61.589

100

0.616

Multiple sequence alignment