Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   AB1395_RS08025 Genome accession   NZ_CP161815
Coordinates   1580718..1581437 (-) Length   239 a.a.
NCBI ID   WP_218653621.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SS-15     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1575718..1586437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1395_RS07995 (AB1395_07995) rimP 1576880..1577353 (-) 474 WP_218654436.1 ribosome maturation factor RimP -
  AB1395_RS08000 (AB1395_08000) - 1577482..1577928 (-) 447 WP_218653618.1 pyridoxamine 5'-phosphate oxidase family protein -
  AB1395_RS08010 (AB1395_08010) trmB 1578209..1578844 (-) 636 WP_218653619.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  AB1395_RS08015 (AB1395_08015) ccrZ 1578841..1579626 (-) 786 WP_160544564.1 cell cycle regulator CcrZ -
  AB1395_RS08020 (AB1395_08020) - 1579682..1580716 (-) 1035 WP_218653620.1 ABC transporter permease -
  AB1395_RS08025 (AB1395_08025) pptA 1580718..1581437 (-) 720 WP_218653621.1 ABC transporter ATP-binding protein Regulator
  AB1395_RS08030 (AB1395_08030) - 1581508..1581924 (+) 417 WP_218653622.1 HIT family protein -
  AB1395_RS08035 (AB1395_08035) - 1581924..1582226 (+) 303 WP_218653623.1 hypothetical protein -
  AB1395_RS08040 (AB1395_08040) - 1582367..1584877 (-) 2511 WP_367783228.1 GBS Bsp-like repeat-containing protein -
  AB1395_RS08045 (AB1395_08045) trmL 1584958..1585494 (-) 537 WP_218654437.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26678.93 Da        Isoelectric Point: 4.4139

>NTDB_id=1022607 AB1395_RS08025 WP_218653621.1 1580718..1581437(-) (pptA) [Streptococcus pluranimalium strain SS-15]
MLKIDHLVGGYVNIPVLKDISFEVSSGEVVGLIGLNGAGKSTTISEIIGLLQPYQGSVTLDGLQLLENPESYRRKIGYIP
ETPILYEELTLQEHLDTIALAYGLGEQQELRQKLLQLFRLEDKLDWYPINFSKGMKQKVMIIAALMIEPSLLIVDEPFLG
LDPLAIRDLTTIIAEEKAKGTAVLMSTHVLDSAEKMCDRFVILHHGEILANGSLEELRQQFSLPTADLTDIYMQLTQEN

Nucleotide


Download         Length: 720 bp        

>NTDB_id=1022607 AB1395_RS08025 WP_218653621.1 1580718..1581437(-) (pptA) [Streptococcus pluranimalium strain SS-15]
ATGCTAAAAATTGATCATTTAGTTGGTGGCTACGTTAATATACCTGTTTTAAAGGACATTTCTTTTGAGGTTTCCTCAGG
AGAAGTTGTTGGCTTAATTGGGCTTAACGGAGCAGGGAAATCAACGACTATCAGTGAAATCATTGGACTTTTGCAACCTT
ATCAGGGAAGTGTGACTTTGGATGGCTTGCAATTGTTAGAAAATCCAGAAAGTTACCGTCGCAAAATAGGTTATATCCCT
GAGACACCAATCTTGTATGAAGAGTTGACCTTGCAAGAACATTTGGATACAATTGCTTTAGCTTATGGTTTAGGTGAGCA
GCAAGAATTACGACAAAAGCTGTTACAACTCTTTCGTTTAGAGGATAAATTAGACTGGTATCCCATTAATTTTTCAAAAG
GGATGAAGCAGAAAGTAATGATTATTGCAGCTCTCATGATTGAGCCAAGCTTATTGATTGTGGATGAGCCTTTTTTGGGA
TTAGATCCTTTAGCGATTAGAGATTTGACGACTATTATTGCAGAGGAAAAAGCTAAAGGCACAGCTGTTTTGATGAGTAC
CCATGTTCTTGATTCTGCTGAAAAAATGTGTGACCGTTTTGTCATTCTCCATCATGGTGAGATTCTAGCTAATGGTAGTC
TAGAAGAGTTACGACAACAATTTAGTCTACCAACAGCTGATTTGACTGATATTTATATGCAATTGACGCAGGAGAATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

69.456

100

0.695
  pptA Streptococcus thermophilus LMD-9

68.201

100

0.682

Multiple sequence alignment