Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB1395_RS02830 Genome accession   NZ_CP161815
Coordinates   544316..546112 (+) Length   598 a.a.
NCBI ID   WP_316606603.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SS-15     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 539316..551112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1395_RS02805 (AB1395_02805) queA 539556..540602 (-) 1047 WP_367783791.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  AB1395_RS02810 (AB1395_02810) - 540772..541476 (+) 705 WP_316606604.1 glucosamine-6-phosphate deaminase -
  AB1395_RS02815 (AB1395_02815) - 541523..542479 (-) 957 WP_367783793.1 glutathione S-transferase family protein -
  AB1395_RS02820 (AB1395_02820) - 542583..543296 (+) 714 WP_278025070.1 pseudouridine synthase -
  AB1395_RS02825 (AB1395_02825) - 543357..544319 (+) 963 WP_278025071.1 competence protein CoiA -
  AB1395_RS02830 (AB1395_02830) pepF 544316..546112 (+) 1797 WP_316606603.1 oligoendopeptidase F Regulator
  AB1395_RS02835 (AB1395_02835) - 546140..546562 (+) 423 WP_218654149.1 hypothetical protein -
  AB1395_RS02840 (AB1395_02840) - 546766..547311 (+) 546 WP_367783796.1 GNAT family N-acetyltransferase -
  AB1395_RS02845 (AB1395_02845) - 547308..547922 (+) 615 WP_367783798.1 HAD-IA family hydrolase -
  AB1395_RS02850 (AB1395_02850) - 548187..548405 (-) 219 WP_367783800.1 hypothetical protein -
  AB1395_RS02855 (AB1395_02855) - 548621..549328 (+) 708 WP_367783802.1 O-methyltransferase -
  AB1395_RS02860 (AB1395_02860) - 549427..550353 (+) 927 WP_278025075.1 peptidyl-prolyl cis-trans isomerase -
  AB1395_RS02865 (AB1395_02865) - 550506..551102 (+) 597 WP_367783804.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68588.22 Da        Isoelectric Point: 4.4627

>NTDB_id=1022583 AB1395_RS02830 WP_316606603.1 544316..546112(+) (pepF) [Streptococcus pluranimalium strain SS-15]
MTDNRSHLKEEETWDLSTIFETDQAWEVERQALENDLKASQNDAGHLLDSAKSLLDITENALALMRRLETLYVYASMKND
QDTTIAVYQEMEAKATALSSLYSQTFAFYEPEFLAITKEQLENYKGEEPGLLAYGHYFEKLLAAKDHVLSQEAEELLAGA
SEIFGSAAETFSIFDNADVTYPWVTNDEGELVELTHGNFISLMESKNREVRKGAYEAYYGVYEQFQHTYAKTLQTNVKVH
NYKAKVRGYESARQAALSANFIPESAYDTLLAVVNKHLPLLHRYMKLRQELLGLDDLKMYDVYTPLSEHDMAITYLEALE
KSRQVLTVFGKDYSDRVDRAFSERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLIHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLEEVTDDKERFAILNHYLDGFKGTIFRQTQFAEFELAIHQADQAGQVLTSDF
LNKTYADLNEKYYGLSAEDNHEIQFEWARIPHFYYNFYVYQYATGFAAASYLADRIVHGTDKDRDNYLDYLKAGNSDYPL
NVIAKAGVDMTSADYLEGAFKVFEERLEELENLVAKLS

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=1022583 AB1395_RS02830 WP_316606603.1 544316..546112(+) (pepF) [Streptococcus pluranimalium strain SS-15]
ATGACAGATAACCGTAGCCATCTGAAGGAAGAAGAAACTTGGGATTTAAGCACTATTTTTGAGACAGATCAAGCTTGGGA
AGTGGAACGTCAAGCCTTAGAAAACGATTTGAAAGCTTCTCAAAATGATGCGGGGCACCTTTTGGATTCAGCTAAAAGCT
TATTGGATATTACGGAAAATGCTTTAGCTTTGATGCGTCGTTTAGAGACATTATACGTCTATGCTTCCATGAAAAATGAC
CAGGATACGACAATCGCAGTTTATCAAGAGATGGAAGCCAAGGCGACGGCCTTATCATCTCTTTATAGTCAGACCTTTGC
CTTTTATGAGCCAGAATTTTTGGCTATCACTAAAGAACAGTTGGAAAACTATAAAGGTGAAGAGCCGGGCCTTCTTGCTT
ATGGCCATTATTTTGAAAAATTGTTGGCAGCTAAAGACCATGTATTGTCCCAAGAAGCAGAAGAATTACTAGCTGGTGCC
TCTGAAATTTTTGGCTCAGCAGCTGAAACCTTCTCCATTTTTGATAATGCTGATGTCACCTATCCTTGGGTAACCAATGA
TGAAGGAGAATTGGTCGAATTAACCCATGGTAACTTTATCAGCCTTATGGAATCTAAAAATCGTGAGGTTCGTAAGGGTG
CCTATGAAGCCTATTACGGTGTTTATGAGCAGTTTCAGCATACTTATGCTAAAACCCTTCAAACCAACGTTAAGGTACAT
AATTACAAGGCTAAAGTGCGTGGCTATGAGTCTGCTCGCCAAGCTGCTCTTTCAGCAAACTTTATTCCTGAGTCTGCCTA
TGACACTTTGTTAGCTGTTGTCAATAAGCATTTACCGCTTCTTCATCGCTATATGAAACTTCGTCAGGAGCTATTAGGAC
TGGATGACCTCAAAATGTACGATGTCTATACGCCACTGTCAGAGCATGATATGGCGATTACTTATCTGGAAGCTCTTGAA
AAGTCACGTCAAGTGTTAACGGTATTTGGTAAAGATTATAGCGACCGCGTTGACCGTGCTTTCTCAGAGCGTTGGATTGA
TGTACATGTTAATAAAGGGAAACGTTCGGGTGCCTATTCAGGCGGTTCTTACGATACCAATGCTTTTATGTTGCTCAACT
GGCAAGATACTTTAGACAATCTTTATACCCTTATTCATGAAACAGGCCATAGTCTGCATTCGACCTTTACACGTGAGAAT
CAGCCTTATGTTTATGGGGATTACAGTATTTTCCTAGCTGAAATTGCCTCAACGACTAATGAAAATATTTTGACCGAAAC
CCTCTTAGAAGAAGTGACTGATGATAAAGAACGTTTTGCTATCCTTAATCATTATTTGGATGGCTTTAAAGGAACAATCT
TCCGTCAAACACAATTCGCTGAGTTTGAATTAGCTATCCACCAAGCTGATCAAGCAGGGCAAGTCTTGACTAGCGATTTC
CTCAATAAGACTTATGCTGATTTGAATGAGAAGTATTACGGTTTGTCAGCTGAGGACAATCATGAGATTCAGTTTGAATG
GGCCCGTATCCCACATTTCTACTATAATTTCTACGTTTATCAATACGCGACAGGGTTTGCGGCTGCTTCTTATCTAGCAG
ATCGTATTGTTCATGGAACAGACAAAGACCGTGATAACTACTTAGACTATCTCAAAGCTGGTAATTCAGACTATCCACTT
AATGTCATTGCCAAAGCAGGTGTTGATATGACTAGTGCTGATTACCTTGAAGGGGCCTTCAAAGTCTTTGAAGAACGCTT
GGAAGAATTGGAAAACTTAGTCGCAAAACTAAGTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(112-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.98

99.666

0.717

Multiple sequence alignment