Detailed information NTG1022574

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AB1395_RS00940
• Genome accession: NZ_CP161815
• Coordinates: 166740..169178 (+)
• Length: 812 a.a.
• NCBI ID: WP_218653919.1
• Uniprot ID: -
• Organism: Streptococcus pluranimalium strain SS-15
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 161740..174178

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB1395_RS00925 (AB1395_00925)	rpsB	164051..164812 (+)	762	WP_104967140.1	30S ribosomal protein S2	-
AB1395_RS00930 (AB1395_00930)	tsf	165044..166084 (+)	1041	WP_218653917.1	translation elongation factor Ts	-
AB1395_RS00935 (AB1395_00935)	-	166279..166740 (+)	462	WP_218653918.1	CtsR family transcriptional regulator	-
AB1395_RS00940 (AB1395_00940)	clpC	166740..169178 (+)	2439	WP_218653919.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
AB1395_RS00945 (AB1395_00945)	-	169404..170075 (+)	672	WP_218653920.1	response regulator transcription factor	-
AB1395_RS00950 (AB1395_00950)	-	170077..171438 (+)	1362	WP_278024871.1	HAMP domain-containing sensor histidine kinase	-
AB1395_RS00955 (AB1395_00955)	-	171612..172328 (+)	717	WP_218653922.1	CPBP family glutamic-type intramembrane protease	-
AB1395_RS00960 (AB1395_00960)	-	172402..173160 (+)	759	WP_218653923.1	PrsW family glutamic-type intramembrane protease	-

Sequence

Protein

• Length: 812 a.a.
• Molecular weight: 90237.40 Da
• Isoelectric Point: 5.4230

>NTDB_id=1022574 AB1395_RS00940 WP_218653919.1 166740..169178(+) (clpC) [Streptococcus pluranimalium strain SS-15]
MVKYSQKMQDVFGLSQIIATRFSCQLLESWHLLLGLISSDETIAGLTFREFDSETGENDYFAAAILASEKTFDDSINHFD
FHEQSVATADMLAFAEQISLITGDDEVGTEHVLMAMLLSPDRMPIRVLELAGFKLKNDGEGASIFSIRQGLEKHAGFTKD
QVKDIHELKKPKRPKANNFTDMMKPPSTAGELSDFTRDLTAMAEAGALEAVVGRDKEVSRMVQVLSRKTKNNPVLVGDAG
VGKTALAYGLAQRIASGEIPYELRDMRVLELDMMSVVAGTRFRGDFEERMNQIIDDIEADGHIILFVDEMHTIMGSGSGI
DSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKIIIEEPSVADAFEILKGLRPSYEVYHHVSLSDEA
LMTAVKSAHRYMTSKNLPDSAIDLMDEASATVQTMVKKEAQAELSPIDEALLDGDFKAVSRLLKKEEKVSLPKVIKVTEE
HIMSTLSRLTGIPVEKMTQADNQKYLNLEKELHKRVIGQDTAISAISRAIRRNQSGIRTGKRPIGSFMFLGPTGVGKTEL
AKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRQKPYSVLLFDEVEKAHPDIFNVLLQVL
DDGMLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGVQDLSHDHDAMEKRILEELKKAYRPEFINRIDEKVVFHSL
TQDHMREVVKIMVQPLIKQLAEKGIVLKFQPSALKHLAEDGYDIEMGARPLRRTIQTQVEDHLAELVLSGQLATGNTLKV
GVKQGKLKFDVI

Nucleotide

• Length: 2439 bp

>NTDB_id=1022574 AB1395_RS00940 WP_218653919.1 166740..169178(+) (clpC) [Streptococcus pluranimalium strain SS-15]
ATGGTTAAGTATTCACAAAAAATGCAGGATGTTTTTGGCCTGTCTCAAATTATTGCTACACGATTTTCTTGTCAGCTCTT
AGAAAGTTGGCATCTTTTACTTGGATTGATTTCTAGTGATGAAACAATTGCAGGGTTGACTTTCCGAGAATTCGATAGCG
AAACTGGTGAGAATGATTATTTTGCAGCAGCTATTTTAGCGTCAGAAAAGACTTTTGACGATAGTATCAATCACTTTGAT
TTTCATGAACAATCAGTTGCAACGGCTGATATGTTGGCTTTTGCGGAGCAAATTAGCCTTATTACTGGAGATGATGAAGT
CGGTACGGAGCATGTTCTCATGGCTATGCTTTTGAGTCCTGACAGGATGCCTATCCGTGTCCTTGAGTTAGCTGGTTTCA
AACTAAAAAATGATGGTGAAGGTGCTTCAATTTTTAGTATTCGCCAAGGTTTAGAGAAGCATGCTGGTTTTACGAAAGAC
CAAGTCAAGGACATTCATGAATTGAAAAAACCAAAACGTCCTAAAGCGAACAATTTTACAGATATGATGAAACCACCGTC
AACTGCAGGTGAGTTATCGGATTTTACTCGCGATTTGACAGCCATGGCGGAAGCTGGAGCTCTCGAAGCAGTTGTTGGTC
GTGACAAAGAAGTCTCTCGCATGGTACAGGTGCTTAGCCGTAAAACCAAGAATAACCCAGTCTTAGTTGGTGATGCTGGT
GTTGGTAAAACTGCCCTAGCTTATGGATTAGCACAACGTATTGCGAGTGGTGAGATTCCTTATGAGTTACGCGACATGCG
CGTTCTTGAATTGGACATGATGAGTGTAGTTGCGGGAACGCGTTTCCGTGGTGACTTTGAAGAGCGTATGAACCAAATTA
TTGATGATATTGAAGCTGATGGTCATATCATTCTCTTTGTGGATGAGATGCATACTATCATGGGTTCTGGTAGTGGTATT
GATAGCACACTTGATGCGGCTAATATCCTAAAGCCTGCTCTTTCTCGTGGAACCCTCCACATGGTTGGGGCTACAACACA
AGAAGAGTACCAAAAACACATCGAAAAGGACGCTGCCTTGTCACGTCGCTTTGCTAAAATTATTATTGAAGAGCCATCAG
TTGCAGATGCTTTTGAGATTTTGAAAGGATTACGTCCGAGTTATGAAGTCTATCATCATGTGTCACTATCAGATGAAGCT
TTGATGACAGCGGTTAAGTCTGCTCACCGTTACATGACCAGTAAAAACCTACCTGATTCAGCTATCGATTTGATGGATGA
AGCCAGCGCGACGGTTCAGACGATGGTCAAAAAAGAAGCGCAAGCAGAGCTATCTCCTATTGATGAAGCCCTTTTAGATG
GTGATTTTAAAGCTGTCTCTCGTTTGCTTAAGAAGGAGGAGAAGGTGTCTCTTCCAAAAGTTATCAAGGTAACCGAAGAG
CACATCATGTCTACCCTCAGTCGTCTAACAGGAATTCCTGTGGAAAAAATGACACAGGCTGACAATCAGAAGTATCTCAA
CTTGGAAAAAGAGTTGCATAAGCGTGTGATTGGGCAAGATACGGCGATTTCGGCGATTAGTCGGGCAATTCGTCGTAACC
AGTCGGGCATTAGGACTGGTAAACGTCCTATCGGATCTTTCATGTTCTTGGGACCAACTGGAGTTGGTAAGACGGAACTG
GCTAAGGCCTTGGCGGAAGTCCTTTTTGATGATGAATCAGCCCTCATTCGTTTTGACATGTCTGAGTATATGGAAAAATT
TGCCGCCTCACGTCTTAACGGTGCTCCTCCGGGTTATGTCGGCTACGATGAAGGGGGAGAATTAACAGAGAAAGTTCGTC
AGAAACCTTATTCTGTCCTCTTATTTGATGAGGTTGAAAAGGCACATCCAGATATTTTTAATGTTCTTTTGCAAGTGCTA
GATGATGGGATGTTGACGGATAGTCGTGGACGCAAAGTGGATTTTTCAAATACGATTATCATCATGACGTCAAATCTTGG
TGCTACAGCTCTTCGTGATGATAAGACAGTTGGCTTTGGCGTTCAGGATCTCTCACATGACCATGATGCTATGGAAAAAC
GTATCTTGGAAGAGCTTAAAAAAGCTTATCGTCCTGAATTTATCAACCGTATTGATGAGAAAGTTGTCTTCCATAGCTTA
ACACAAGATCACATGAGAGAAGTCGTTAAGATTATGGTTCAACCGTTAATCAAGCAGTTAGCTGAGAAAGGTATTGTCTT
AAAATTCCAACCATCAGCCCTTAAACATTTGGCTGAAGATGGTTACGATATCGAAATGGGAGCTCGGCCACTTCGTCGCA
CCATTCAAACCCAAGTCGAAGACCACCTAGCAGAATTAGTTCTTTCAGGACAATTAGCCACAGGCAATACCCTCAAAGTT
GGCGTTAAACAAGGCAAGCTTAAATTTGATGTGATTTGA

Domains

Predicted by InterproScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (22-50)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-136)

• AAA domain (Cdc48 subfamily) (AAA_2) (542-713)

• AAA lid domain (AAA_lid_9) (373-449)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (720-800)

• ATPase family associated with various cellular activities (AAA) (AAA) (234-368)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus mutans UA159	71.587	100	0.717
clpC	Streptococcus thermophilus LMG 18311	70.956	100	0.713
clpC	Streptococcus thermophilus LMD-9	70.833	100	0.712
clpC	Streptococcus pneumoniae Rx1	65.314	100	0.654
clpC	Streptococcus pneumoniae TIGR4	65.314	100	0.654
clpC	Streptococcus pneumoniae D39	65.314	100	0.654
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.148	100	0.496
clpC	Bacillus subtilis subsp. subtilis str. 168	44.632	100	0.456