Detailed information NTG0102255

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: R2J74_RS09515
• Genome accession: NZ_AP027743
• Coordinates: 1921882..1923240 (+)
• Length: 452 a.a.
• NCBI ID: WP_316269862.1
• Uniprot ID: -
• Organism: Claveliimonas bilis strain 10CPCBH12
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1916882..1928240

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R2J74_RS09490 (Lac3_18650)	-	1917160..1917528 (+)	369	WP_230105283.1	GntR family transcriptional regulator	-
R2J74_RS09495 (Lac3_18660)	-	1917607..1920042 (+)	2436	WP_316269860.1	ATP-dependent Clp protease ATP-binding subunit	-
R2J74_RS09500 (Lac3_18670)	-	1920101..1920514 (+)	414	WP_256195642.1	endosialidase	-
R2J74_RS09505 (Lac3_18680)	-	1920595..1921092 (-)	498	WP_316269861.1	GNAT family N-acetyltransferase	-
R2J74_RS09510 (Lac3_18690)	-	1921271..1921831 (+)	561	WP_230105287.1	helix-turn-helix domain-containing protein	-
R2J74_RS09515 (Lac3_18700)	radA	1921882..1923240 (+)	1359	WP_316269862.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 452 a.a.
• Molecular weight: 49372.00 Da
• Isoelectric Point: 6.9213

>NTDB_id=102255 R2J74_RS09515 WP_316269862.1 1921882..1923240(+) (radA) [Claveliimonas bilis strain 10CPCBH12]
MAKAKKTIFFCQNCGHEESKWLGQCPACREWNTFVEEKITPVKGAAAGKSVREGEVVTLSSVRTDGEERIKTDIQELDRV
LGGGIVPGSLVLVGGDPGIGKSTLLLQVCQKLSEKKESVLYISGEESLKQIKLRADRMGKFSEYLLLLCETNLETIRQTI
ERQKPHLAIIDSIQTMYSEEIGSAPGSVSQVREATNTFMQLAKGLGISIFIVGHVTKEGTVAGPRVLEHMVDTVLYFEGD
RHASYRILRGVKNRFGSTNEIGVFEMRQTGLEEVANPSEFMLSGKPENASGSVVACSMEGTRPILMEIQALVCASNFGFP
RRTAAGTDYNRVNLLMAVLEKRMGLPLSNYDAYVNIAGGIRMNEPAVDLGIVMAIFSSYKNRPVPEDMIVFGEVGLSGEV
RAVSMPEQRVSEAKKLGFKTCVIPSVSENAVKNIEGIRVIGVRSVSEAIQLL

Nucleotide

• Length: 1359 bp

>NTDB_id=102255 R2J74_RS09515 WP_316269862.1 1921882..1923240(+) (radA) [Claveliimonas bilis strain 10CPCBH12]
GTGGCAAAAGCGAAAAAGACAATTTTTTTCTGCCAGAACTGCGGACATGAAGAGAGCAAATGGCTGGGACAGTGTCCGGC
ATGTCGGGAGTGGAATACATTTGTAGAGGAAAAGATCACGCCGGTAAAAGGCGCGGCAGCAGGGAAAAGTGTAAGGGAAG
GGGAAGTAGTCACTCTTTCCAGTGTGAGAACCGACGGTGAAGAGAGGATAAAGACAGACATACAGGAACTGGATCGTGTG
CTGGGAGGGGGAATTGTCCCCGGTTCTCTCGTGTTGGTGGGAGGAGATCCGGGAATCGGTAAATCAACCCTTCTCCTTCA
GGTATGCCAAAAGCTGTCCGAAAAAAAAGAAAGTGTACTTTATATTTCCGGGGAGGAGTCGCTGAAGCAGATAAAACTTA
GAGCTGACCGCATGGGGAAATTTTCAGAATATTTGCTTCTTCTGTGTGAGACGAATCTGGAAACGATCCGGCAGACCATC
GAGAGGCAGAAGCCCCATCTTGCGATCATTGATTCCATACAGACAATGTACAGCGAAGAGATAGGCTCTGCTCCGGGAAG
TGTTTCCCAGGTAAGAGAGGCAACGAATACGTTTATGCAGCTTGCCAAGGGACTGGGGATTTCTATTTTTATAGTAGGTC
ACGTGACAAAAGAAGGAACAGTGGCCGGCCCCAGGGTATTGGAGCATATGGTAGATACAGTGCTGTATTTTGAGGGAGAT
CGGCATGCCTCCTATCGGATCTTGCGGGGAGTGAAAAACCGTTTTGGCTCCACCAATGAGATCGGTGTGTTTGAAATGCG
TCAGACAGGGCTGGAAGAAGTAGCGAACCCGTCGGAATTTATGCTGAGTGGAAAGCCGGAAAATGCTTCGGGATCTGTGG
TGGCATGTTCTATGGAAGGGACAAGGCCTATTTTGATGGAAATACAGGCTCTGGTCTGTGCCAGCAATTTCGGTTTCCCG
AGAAGAACGGCAGCAGGGACAGACTACAACAGAGTGAATCTCCTTATGGCGGTACTGGAAAAGCGCATGGGACTTCCGCT
TTCCAACTATGATGCCTATGTCAATATTGCCGGAGGGATCCGGATGAATGAACCGGCAGTGGATCTGGGTATTGTCATGG
CAATTTTCTCAAGTTACAAAAACCGCCCGGTGCCGGAGGATATGATCGTCTTCGGCGAAGTGGGATTAAGCGGCGAAGTC
CGCGCAGTCAGTATGCCGGAGCAGAGAGTGTCAGAGGCAAAGAAGCTGGGATTTAAGACATGTGTAATTCCATCGGTATC
TGAAAATGCAGTGAAAAATATAGAAGGGATCCGGGTGATCGGAGTAAGAAGTGTCAGTGAGGCGATTCAGCTGTTGTAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (344-425)

• AAA domain (AAA_25) (68-219)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-36)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	58.022	100	0.584
radA	Streptococcus mitis NCTC 12261	54.545	99.779	0.544
radA	Streptococcus pneumoniae Rx1	54.545	99.779	0.544
radA	Streptococcus pneumoniae D39	54.545	99.779	0.544
radA	Streptococcus pneumoniae R6	54.545	99.779	0.544
radA	Streptococcus pneumoniae TIGR4	54.545	99.779	0.544
radA	Streptococcus mitis SK321	54.545	99.779	0.544