Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R2J37_RS13005 Genome accession   NZ_AP027742
Coordinates   2687976..2689334 (-) Length   452 a.a.
NCBI ID   WP_230105288.1    Uniprot ID   -
Organism   Claveliimonas bilis strain 12BBH14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2682976..2694334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2J37_RS12995 (Lac1_25720) - 2686408..2687163 (-) 756 WP_316265451.1 TraX family protein -
  R2J37_RS13000 (Lac1_25730) - 2687198..2687848 (-) 651 WP_316265453.1 helix-turn-helix domain-containing protein -
  R2J37_RS13005 (Lac1_25740) radA 2687976..2689334 (-) 1359 WP_230105288.1 DNA repair protein RadA Machinery gene
  R2J37_RS13010 (Lac1_25750) - 2689385..2689945 (-) 561 WP_230105287.1 helix-turn-helix domain-containing protein -
  R2J37_RS13015 (Lac1_25760) - 2690123..2690620 (+) 498 WP_316265456.1 GNAT family N-acetyltransferase -
  R2J37_RS13020 (Lac1_25770) - 2690701..2691114 (-) 414 WP_230105285.1 endosialidase -
  R2J37_RS13025 (Lac1_25780) - 2691173..2693608 (-) 2436 WP_256195644.1 ATP-dependent Clp protease ATP-binding subunit -
  R2J37_RS13030 (Lac1_25790) - 2693687..2694055 (-) 369 WP_230105283.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49251.85 Da        Isoelectric Point: 6.9213

>NTDB_id=102247 R2J37_RS13005 WP_230105288.1 2687976..2689334(-) (radA) [Claveliimonas bilis strain 12BBH14]
MAKAKKTIFFCQNCGHEESKWLGQCPACREWNTFVEEKITPVKGAAAGKSVREGEVVTLSSVRTDGEERIKTDIQELDRV
LGGGIVPGSLVLVGGDPGIGKSTLLLQVCQKLSGKKESVLYISGEESLKQIKLRADRMGKFSEDLLLLCETNLETIRQTI
ERQKPHLAIIDSIQTMYSEEIGSAPGSVSQVREATNTFMQLAKGLGISIFIVGHVTKEGTVAGPRVLEHMVDTVLYFEGD
RHASYRILRGVKNRFGSTNEIGVFEMRQTGLEEVANPSEFMLSGKPENASGSVVACSMEGTRPILMEIQALVCASNFGFP
RRTAAGTDYNRVNLLMAVLEKRMGLPLSNYDAYVNIAGGIRMNEPAVDLGIVMAIFSSYKNRPVPEDMIVFGEVGLSGEV
RAVSMPEQRVSEAKKLGFKTCVIPSVSENAVKNIEGIRVIGVRSVSEAIQLL

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=102247 R2J37_RS13005 WP_230105288.1 2687976..2689334(-) (radA) [Claveliimonas bilis strain 12BBH14]
GTGGCAAAAGCGAAAAAGACAATTTTTTTCTGCCAGAACTGCGGACATGAAGAGAGCAAATGGCTGGGACAGTGTCCGGC
ATGTCGGGAGTGGAATACATTTGTAGAGGAAAAGATCACGCCGGTAAAAGGCGCGGCAGCAGGGAAAAGTGTAAGGGAAG
GGGAAGTGGTCACTCTTTCCAGTGTGAGAACCGACGGTGAAGAGAGGATAAAGACAGACATACAGGAACTGGATCGTGTG
CTGGGAGGGGGAATTGTCCCCGGTTCTCTCGTGTTGGTAGGAGGAGATCCGGGAATCGGTAAATCAACCCTTCTCCTTCA
GGTATGCCAAAAACTGTCCGGAAAAAAAGAAAGCGTACTTTATATTTCCGGGGAAGAGTCGCTGAAGCAGATAAAACTTA
GAGCTGACCGCATGGGGAAATTTTCAGAAGATCTGCTTCTTCTGTGTGAGACGAATCTGGAAACGATCCGGCAGACCATT
GAGAGGCAGAAGCCCCATCTTGCGATCATTGATTCTATACAGACAATGTACAGCGAAGAGATAGGCTCTGCTCCGGGAAG
TGTTTCCCAGGTAAGAGAGGCAACGAATACGTTTATGCAGCTTGCCAAGGGACTGGGGATTTCTATTTTTATAGTAGGTC
ACGTGACAAAAGAAGGAACAGTGGCCGGCCCCAGGGTATTGGAGCATATGGTAGATACAGTGCTGTATTTTGAGGGGGAT
CGGCATGCCTCCTATCGGATCTTGCGAGGAGTGAAAAACCGTTTTGGCTCCACCAATGAGATCGGTGTGTTTGAAATGCG
TCAGACAGGGCTGGAAGAAGTAGCGAACCCGTCGGAATTTATGCTGAGTGGAAAGCCGGAAAATGCTTCGGGATCTGTGG
TGGCATGTTCTATGGAAGGGACAAGGCCTATTTTGATGGAAATACAGGCTCTGGTCTGTGCCAGCAATTTCGGTTTCCCG
AGAAGAACGGCAGCAGGGACAGACTACAACAGAGTGAATCTCCTTATGGCGGTACTGGAAAAGCGCATGGGACTTCCGCT
TTCCAACTATGATGCCTATGTCAATATTGCCGGAGGGATCCGGATGAATGAACCGGCAGTGGATCTGGGTATTGTCATGG
CGATTTTCTCAAGTTATAAAAACCGCCCGGTGCCGGAGGATATGATCGTCTTCGGCGAAGTGGGATTAAGCGGCGAAGTC
CGCGCAGTGAGTATGCCGGAGCAGAGAGTGTCAGAGGCAAAGAAGCTGGGATTTAAGACATGTGTGATCCCATCGGTATC
TGAAAATGCAGTGAAAAATATAGAAGGGATCCGGGTGATCGGGGTAAGAAGTGTCAGCGAGGCGATTCAGCTGTTGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-425)

AAA domain (AAA_25)

(68-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

58.242

100

0.586
  radA Streptococcus mitis NCTC 12261

54.545

99.779

0.544
  radA Streptococcus pneumoniae Rx1

54.545

99.779

0.544
  radA Streptococcus pneumoniae D39

54.545

99.779

0.544
  radA Streptococcus pneumoniae R6

54.545

99.779

0.544
  radA Streptococcus pneumoniae TIGR4

54.545

99.779

0.544
  radA Streptococcus mitis SK321

54.545

99.779

0.544

Multiple sequence alignment