Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DQM81_RS00190 Genome accession   NZ_LS483389
Coordinates   27243..27998 (+) Length   251 a.a.
NCBI ID   WP_111688210.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC10879     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 22243..32998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM81_RS10200 - 23943..24224 (-) 282 WP_074375313.1 transposase -
  DQM81_RS00180 (NCTC10879_00036) pcsB 24646..25842 (+) 1197 WP_010921769.1 peptidoglycan hydrolase PcsB -
  DQM81_RS00185 (NCTC10879_00037) - 26095..27057 (+) 963 WP_002986722.1 ribose-phosphate diphosphokinase -
  DQM81_RS00190 (NCTC10879_00038) recO 27243..27998 (+) 756 WP_111688210.1 DNA repair protein RecO Machinery gene
  DQM81_RS00195 (NCTC10879_00039) plsX 28101..29108 (+) 1008 WP_002987696.1 phosphate acyltransferase PlsX -
  DQM81_RS00200 (NCTC10879_00040) - 29101..29343 (+) 243 WP_014407187.1 phosphopantetheine-binding protein -
  DQM81_RS00205 (NCTC10879_00041) purC 29494..30198 (+) 705 WP_168433713.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29490.89 Da        Isoelectric Point: 6.9077

>NTDB_id=1022280 DQM81_RS00190 WP_111688210.1 27243..27998(+) (recO) [Streptococcus pyogenes strain NCTC10879]
MQLTESLGIVLFNRNYREDDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTSADFIFKLNDTGLSYVVDYSNVNTYRY
INNDIFRLAYASYVLALADAAIADNESDSHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECAICHRTDL
PLDFSHRFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDDLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFI
DNLVKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=1022280 DQM81_RS00190 WP_111688210.1 27243..27998(+) (recO) [Streptococcus pyogenes strain NCTC10879]
ATGCAACTAACAGAATCACTAGGCATCGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTAGTCAAAATATTTAC
TGAAGTAGCAGGTAAGCAGATGTTTTTCGTGAAACATATTAGTCGTTCCAAAATGTCCTCAATCATTCAACCACTAACGA
GTGCTGATTTTATTTTCAAGTTAAATGATACAGGCTTGTCTTATGTTGTTGACTATAGTAACGTTAACACTTATCGGTAT
ATTAATAATGATATTTTTCGATTAGCCTATGCTAGTTATGTCTTAGCATTAGCTGATGCTGCGATTGCAGATAATGAATC
AGATTCGCATTTGTTTACGTTTTTGAAAAAAACACTTGATTTGATGGAAGAGGGCCTAGATTATGAAATTTTGACAAATA
TTTTTGAAATTCAGATATTAGATCGTTTTGGTATTAGTCTAAACTTTCATGAGTGTGCCATTTGTCATCGCACTGATTTA
CCGCTTGATTTTTCCCATCGTTTTTCAGCTGTACTTTGTTCTGAACATTATTACAAAGACAACCGACGTAATCATTTAGA
TCCAAATGTTATCTACTTGTTGAGTCGATTTCAAAAAATCACATTTGATGATTTGAGAACTATTTCATTGAATAAAGACA
TCAAAAAGAAGCTTCGTCAGTTCATTGATGAGTTGTATCACGACTATGTAGGAATCAAATTAAAAAGTAAAACATTCATT
GATAATTTAGTTAAGTGGGGAGATATTATGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

60.159

100

0.602

Multiple sequence alignment