Detailed information NTG1022261

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABVF20_RS07305
• Genome accession: NZ_CP160999
• Coordinates: 1656065..1657339 (-)
• Length: 424 a.a.
• NCBI ID: WP_370389507.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer07
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1651065..1662339

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABVF20_RS07295 (ABVF20_14580)	-	1652734..1654413 (+)	1680	WP_370389505.1	McrB family protein	-
ABVF20_RS07300 (ABVF20_14585)	-	1654419..1655549 (+)	1131	WP_370389506.1	5-methylcytosine-specific restriction endonuclease system specificity protein McrC	-
ABVF20_RS07305 (ABVF20_07545)	pilA	1656065..1657339 (-)	1275	WP_370389507.1	signal recognition particle-docking protein FtsY	Machinery gene
ABVF20_RS07310 (ABVF20_07550)	-	1657753..1658301 (-)	549	WP_367577428.1	5'-3'-deoxyribonucleotidase	-
ABVF20_RS07315 (ABVF20_07555)	ruvA	1658343..1658921 (-)	579	WP_370389508.1	Holliday junction branch migration protein RuvA	-
ABVF20_RS07320 (ABVF20_07560)	-	1659000..1659695 (-)	696	WP_323811353.1	septal ring lytic transglycosylase RlpA family protein	-
ABVF20_RS07325 (ABVF20_07565)	-	1660073..1660783 (-)	711	WP_370389509.1	ComF family protein	-
ABVF20_RS07330 (ABVF20_07570)	bioH	1660782..1661534 (+)	753	WP_370389510.1	pimeloyl-ACP methyl ester esterase BioH	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 45376.45 Da
• Isoelectric Point: 4.6427

>NTDB_id=1022261 ABVF20_RS07305 WP_370389507.1 1656065..1657339(-) (pilA) [Snodgrassella alvi strain Acer07]
MFGFFKRKKNTEPEQEQASVNPAQPESVEQPDTAAETHTQPEPAASHQSVEKHTANAVVSESTATETTEDIIVPAAIDEP
AAIATSTESEVVQAPASENTIVIPVETTETPGETDKPARLGWAARLKQGLSKSRNQMAKSLASVFGGGKIDEDLYEELET
VLLTSDMGIDATEKLLTQVRQRVTLKGLKNGNELRSALKEALYELLQPLQQPLSIPADKKPFVIMMAGVNGAGKTTSIGK
LAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQESGDSAAVCFDALEAAKARGIDIVLADTAGRLPTQLHL
MEEIKKVKRVLQKSLPEAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRPIPVRFIGV
GEGIDDLRPFDAKAFVDALIEDEE

Nucleotide

• Length: 1275 bp

>NTDB_id=1022261 ABVF20_RS07305 WP_370389507.1 1656065..1657339(-) (pilA) [Snodgrassella alvi strain Acer07]
ATGTTTGGATTTTTTAAAAGAAAAAAAAATACAGAGCCAGAGCAAGAACAAGCCAGCGTTAACCCCGCTCAGCCGGAATC
AGTAGAGCAACCCGATACAGCGGCTGAAACTCATACTCAGCCTGAACCGGCTGCTTCCCACCAGAGCGTAGAAAAGCACA
CAGCGAATGCAGTCGTCTCCGAATCAACAGCTACCGAAACAACAGAAGACATCATCGTACCGGCAGCCATAGATGAACCG
GCCGCCATTGCCACCAGCACGGAATCAGAAGTTGTTCAGGCTCCGGCCAGCGAAAACACCATAGTGATTCCTGTAGAAAC
CACAGAAACCCCTGGCGAAACAGACAAACCAGCACGACTAGGTTGGGCAGCACGGCTCAAACAGGGCCTAAGCAAATCGC
GCAACCAGATGGCCAAATCGCTGGCGTCTGTATTTGGTGGCGGCAAAATCGATGAAGACCTGTATGAAGAGCTGGAAACT
GTATTGCTCACCAGTGATATGGGTATCGATGCCACCGAAAAATTACTGACACAGGTACGCCAGCGCGTTACTCTGAAAGG
ATTGAAAAACGGAAACGAACTGCGCAGCGCCCTGAAAGAAGCCTTATATGAATTACTGCAGCCACTTCAGCAGCCTTTGT
CCATACCTGCTGATAAAAAACCTTTTGTTATCATGATGGCTGGTGTAAACGGCGCAGGCAAAACCACCAGTATCGGCAAA
CTGGCCAAATATTTTCAAAGTCAGGGTAAAAGCGTCCTCTTGGCCGCAGGCGACACATTCCGCGCAGCTGCGCGCGAGCA
ATTACAGCAATGGGGTGAGCGCAATAACGTAACCGTAATTGCGCAGGAATCCGGTGATTCTGCTGCCGTCTGCTTCGATG
CCCTTGAAGCAGCCAAAGCACGAGGCATCGATATCGTACTGGCTGATACCGCTGGCCGCTTGCCAACCCAGCTGCATCTG
ATGGAAGAAATCAAAAAAGTAAAACGCGTGTTGCAAAAATCATTACCCGAAGCACCACACGAAGTCATGCTGGTACTCGA
TGCCAACGTCGGCCAGAACGCCATCAATCAAGTAGTCGCTTTCGACGACGCCCTTGGCTTAACCGGCCTGATCGTTTCTA
AACTGGATGGCACCGCAAAAGGCGGTATCCTCGCCGCACTGGCCGCCAAACGCCCGATACCAGTACGCTTCATAGGTGTA
GGCGAAGGCATCGACGATTTACGCCCGTTTGACGCCAAAGCATTTGTAGATGCATTGATTGAGGATGAGGAATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (221-420)

• SRP54-type protein, helical bundle domain (SRP54_N) (137-202)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	65.094	100	0.651