Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | QUE24_RS02155 | Genome accession | NZ_AP027741 |
| Coordinates | 436955..438049 (-) | Length | 364 a.a. |
| NCBI ID | WP_286306063.1 | Uniprot ID | - |
| Organism | Methylophaga marina strain NBRC 102421 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 431955..443049
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE24_RS02135 (GCM10025856_04280) | kdsA | 432023..432868 (-) | 846 | WP_091711720.1 | 3-deoxy-8-phosphooctulonate synthase | - |
| QUE24_RS02140 (GCM10025856_04290) | - | 432873..434504 (-) | 1632 | WP_286305032.1 | CTP synthase | - |
| QUE24_RS02145 (GCM10025856_04300) | tilS | 434590..435930 (-) | 1341 | WP_286305033.1 | tRNA lysidine(34) synthetase TilS | - |
| QUE24_RS02150 (GCM10025856_04310) | - | 435939..436895 (-) | 957 | WP_286305034.1 | acetyl-CoA carboxylase carboxyltransferase subunit alpha | - |
| QUE24_RS02155 (GCM10025856_04320) | pilU | 436955..438049 (-) | 1095 | WP_286306063.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| QUE24_RS02160 (GCM10025856_04330) | dnaE | 438151..441648 (-) | 3498 | WP_286305035.1 | DNA polymerase III subunit alpha | - |
Sequence
Protein
Download Length: 364 a.a. Molecular weight: 40430.35 Da Isoelectric Point: 5.4536
>NTDB_id=102218 QUE24_RS02155 WP_286306063.1 436955..438049(-) (pilU) [Methylophaga marina strain NBRC 102421]
MTPYFRLMADKDASDMFFCTGTEPHIKIQGVIRPVGTQKLAPGDVKEMAYSMMTDEQAKEFESTLEMNFAVPLKGVGRFR
VNIFRQRGECSIVIRYIRTSIPTFEQIGLPDVLGDVVMEKRGLILVVGATGSGKSTTLASMIGHRNRNSSSHILTIEDPL
EFVHKHERSIVQQREVGIDTLSYENALKNALREAPDVILIGEIRDMETMKHAINYAETGHLCLATLHANNANQALDRIIN
FFPEILHRQLLMDLSLNLRAIISQRLLPTKDAGRVPAVEVMLNSPYISDLINKGEIGSIKDAMRDSNEKGTITFDQALLG
LYRSGKITEEDALMNADSRNDLSLAIRLGDDSAGSDTPDELILS
MTPYFRLMADKDASDMFFCTGTEPHIKIQGVIRPVGTQKLAPGDVKEMAYSMMTDEQAKEFESTLEMNFAVPLKGVGRFR
VNIFRQRGECSIVIRYIRTSIPTFEQIGLPDVLGDVVMEKRGLILVVGATGSGKSTTLASMIGHRNRNSSSHILTIEDPL
EFVHKHERSIVQQREVGIDTLSYENALKNALREAPDVILIGEIRDMETMKHAINYAETGHLCLATLHANNANQALDRIIN
FFPEILHRQLLMDLSLNLRAIISQRLLPTKDAGRVPAVEVMLNSPYISDLINKGEIGSIKDAMRDSNEKGTITFDQALLG
LYRSGKITEEDALMNADSRNDLSLAIRLGDDSAGSDTPDELILS
Nucleotide
Download Length: 1095 bp
>NTDB_id=102218 QUE24_RS02155 WP_286306063.1 436955..438049(-) (pilU) [Methylophaga marina strain NBRC 102421]
ATGACACCTTATTTCAGACTGATGGCAGACAAGGATGCCTCAGATATGTTTTTCTGCACTGGCACTGAACCCCATATCAA
AATTCAGGGCGTCATCAGACCGGTTGGCACCCAGAAATTAGCGCCCGGTGATGTGAAAGAAATGGCTTATTCGATGATGA
CGGATGAGCAGGCAAAGGAATTTGAAAGCACACTTGAGATGAACTTTGCTGTTCCTCTGAAAGGCGTGGGGCGTTTCCGG
GTCAATATTTTCCGTCAGCGTGGCGAGTGTTCTATCGTGATTCGTTATATCAGAACCTCCATTCCAACCTTTGAACAAAT
TGGTTTGCCTGATGTGCTCGGTGATGTGGTCATGGAAAAACGTGGACTGATTCTAGTGGTGGGGGCAACAGGTTCAGGTA
AGTCAACCACACTGGCATCGATGATAGGTCATCGCAATCGTAATTCCAGTTCACATATTCTGACAATTGAAGACCCGCTT
GAGTTTGTACACAAACATGAACGTTCAATCGTGCAACAGCGTGAAGTTGGTATTGATACTTTATCTTATGAAAACGCCTT
AAAAAATGCCTTGCGTGAAGCGCCCGACGTCATTCTTATTGGTGAAATCCGTGATATGGAAACAATGAAACACGCGATTA
ACTATGCTGAAACGGGTCATCTCTGTCTGGCGACATTGCACGCTAATAACGCCAATCAGGCACTCGATAGAATTATTAAC
TTTTTCCCTGAAATTTTGCACCGACAGCTATTAATGGATTTATCGCTTAATTTGCGAGCCATTATTTCTCAACGATTATT
GCCAACCAAGGATGCAGGGCGTGTACCTGCCGTTGAGGTCATGCTGAATTCTCCATATATCTCAGATTTGATCAATAAAG
GAGAAATTGGCAGTATCAAAGATGCCATGCGTGACAGTAATGAAAAAGGTACCATTACATTTGATCAGGCGCTGCTCGGT
CTGTATCGCAGTGGTAAGATCACAGAAGAAGACGCATTAATGAATGCCGATTCGCGTAATGATTTGAGTCTGGCTATTCG
TCTTGGTGATGACAGTGCCGGATCAGACACACCAGATGAATTAATTCTCAGCTAA
ATGACACCTTATTTCAGACTGATGGCAGACAAGGATGCCTCAGATATGTTTTTCTGCACTGGCACTGAACCCCATATCAA
AATTCAGGGCGTCATCAGACCGGTTGGCACCCAGAAATTAGCGCCCGGTGATGTGAAAGAAATGGCTTATTCGATGATGA
CGGATGAGCAGGCAAAGGAATTTGAAAGCACACTTGAGATGAACTTTGCTGTTCCTCTGAAAGGCGTGGGGCGTTTCCGG
GTCAATATTTTCCGTCAGCGTGGCGAGTGTTCTATCGTGATTCGTTATATCAGAACCTCCATTCCAACCTTTGAACAAAT
TGGTTTGCCTGATGTGCTCGGTGATGTGGTCATGGAAAAACGTGGACTGATTCTAGTGGTGGGGGCAACAGGTTCAGGTA
AGTCAACCACACTGGCATCGATGATAGGTCATCGCAATCGTAATTCCAGTTCACATATTCTGACAATTGAAGACCCGCTT
GAGTTTGTACACAAACATGAACGTTCAATCGTGCAACAGCGTGAAGTTGGTATTGATACTTTATCTTATGAAAACGCCTT
AAAAAATGCCTTGCGTGAAGCGCCCGACGTCATTCTTATTGGTGAAATCCGTGATATGGAAACAATGAAACACGCGATTA
ACTATGCTGAAACGGGTCATCTCTGTCTGGCGACATTGCACGCTAATAACGCCAATCAGGCACTCGATAGAATTATTAAC
TTTTTCCCTGAAATTTTGCACCGACAGCTATTAATGGATTTATCGCTTAATTTGCGAGCCATTATTTCTCAACGATTATT
GCCAACCAAGGATGCAGGGCGTGTACCTGCCGTTGAGGTCATGCTGAATTCTCCATATATCTCAGATTTGATCAATAAAG
GAGAAATTGGCAGTATCAAAGATGCCATGCGTGACAGTAATGAAAAAGGTACCATTACATTTGATCAGGCGCTGCTCGGT
CTGTATCGCAGTGGTAAGATCACAGAAGAAGACGCATTAATGAATGCCGATTCGCGTAATGATTTGAGTCTGGCTATTCG
TCTTGGTGATGACAGTGCCGGATCAGACACACCAGATGAATTAATTCTCAGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
56.41 |
96.429 |
0.544 |
| pilU | Vibrio cholerae strain A1552 |
53.39 |
97.253 |
0.519 |
| pilU | Acinetobacter baylyi ADP1 |
53.736 |
95.604 |
0.514 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
44.915 |
97.253 |
0.437 |
| pilT | Pseudomonas aeruginosa PAK |
40.964 |
91.209 |
0.374 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.5 |
87.912 |
0.374 |
| pilT | Vibrio cholerae strain A1552 |
42.5 |
87.912 |
0.374 |
| pilT | Neisseria meningitidis 8013 |
40.356 |
92.582 |
0.374 |
| pilT | Neisseria gonorrhoeae MS11 |
40.356 |
92.582 |
0.374 |
| pilT | Pseudomonas stutzeri DSM 10701 |
40.361 |
91.209 |
0.368 |
| pilT | Acinetobacter baumannii D1279779 |
41.25 |
87.912 |
0.363 |
| pilT | Acinetobacter nosocomialis M2 |
41.25 |
87.912 |
0.363 |
| pilT | Acinetobacter baumannii strain A118 |
41.25 |
87.912 |
0.363 |