Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABX298_RS08385 Genome accession   NZ_CP160798
Coordinates   1915694..1916095 (-) Length   133 a.a.
NCBI ID   WP_003257770.1    Uniprot ID   A0AAI8FHY9
Organism   Pseudomonas sp. X4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1910694..1921095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX298_RS08370 (ABX298_08370) - 1912664..1914688 (-) 2025 WP_238067653.1 methyl-accepting chemotaxis protein -
  ABX298_RS08375 (ABX298_08375) - 1914730..1915284 (-) 555 WP_025340905.1 chemotaxis protein CheW -
  ABX298_RS08380 (ABX298_08380) pilH 1915281..1915646 (-) 366 WP_025340906.1 twitching motility response regulator PilH -
  ABX298_RS08385 (ABX298_08385) pilG 1915694..1916095 (-) 402 WP_003257770.1 PleD family two-component system response regulator Regulator
  ABX298_RS08390 (ABX298_08390) gshB 1916335..1917288 (+) 954 WP_046613437.1 glutathione synthase -
  ABX298_RS08395 (ABX298_08395) - 1917380..1918285 (+) 906 WP_075046591.1 energy transducer TonB -
  ABX298_RS08400 (ABX298_08400) - 1918457..1919026 (+) 570 WP_367394294.1 YqgE/AlgH family protein -
  ABX298_RS08405 (ABX298_08405) ruvX 1919026..1919463 (+) 438 WP_013974530.1 Holliday junction resolvase RuvX -
  ABX298_RS08410 (ABX298_08410) pyrR 1919513..1920031 (+) 519 WP_025340908.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  ABX298_RS08415 (ABX298_08415) - 1920044..1921048 (+) 1005 WP_003257774.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14576.82 Da        Isoelectric Point: 6.4772

>NTDB_id=1022072 ABX298_RS08385 WP_003257770.1 1915694..1916095(-) (pilG) [Pseudomonas sp. X4]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAAAQQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=1022072 ABX298_RS08385 WP_003257770.1 1915694..1916095(-) (pilG) [Pseudomonas sp. X4]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCGCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTGATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCACCAGCCCAGCATCATCTTCG
TCGATGTGTTGATGCCGCGCCTGGACGGCTACCAGACCTGCGCGGTGATCAAGCACAACAGTGCCTTCAAGGACACCCCG
GTCATTCTGCTGTCGTCACGTGACGGCCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGCTCCGACCAGTTCCTGACCAA
ACCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCACGTGCCCGGTTTTGCCGCAGCCCAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632

Multiple sequence alignment