Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ABZM97_RS14040 Genome accession   NZ_CP160797
Coordinates   2843637..2844383 (-) Length   248 a.a.
NCBI ID   WP_202327046.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2838637..2849383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS14015 (ABZM97_14015) mreC 2839044..2839916 (-) 873 WP_087992315.1 rod shape-determining protein MreC -
  ABZM97_RS14020 (ABZM97_14020) mreB 2839947..2840960 (-) 1014 WP_087992316.1 cell shape-determining protein MreB -
  ABZM97_RS14025 (ABZM97_14025) radC 2841052..2841747 (-) 696 WP_087992317.1 DNA repair protein RadC -
  ABZM97_RS14030 (ABZM97_14030) - 2841784..2842353 (-) 570 WP_087992318.1 Maf family nucleotide pyrophosphatase -
  ABZM97_RS14035 (ABZM97_14035) - 2842505..2843503 (-) 999 WP_202327048.1 SPOR domain-containing protein -
  ABZM97_RS14040 (ABZM97_14040) comC 2843637..2844383 (-) 747 WP_202327046.1 A24 family peptidase Machinery gene
  ABZM97_RS14045 (ABZM97_14045) - 2844519..2845811 (-) 1293 WP_202327044.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ABZM97_RS14050 (ABZM97_14050) valS 2845850..2848492 (-) 2643 WP_253268453.1 valine--tRNA ligase -
  ABZM97_RS14055 (ABZM97_14055) - 2848941..2849132 (+) 192 WP_202327033.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26352.95 Da        Isoelectric Point: 10.0505

>NTDB_id=1022048 ABZM97_RS14040 WP_202327046.1 2843637..2844383(-) (comC) [Bacillus vallismortis strain BL-01]
MLPILFILGLILGSFYYTAGCRIPLRISIVKPRSACSFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFKYPAAELVTA
CLFAAAGIRFGPSPELFPAVVFTSLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLVLI
ALLTHGGIGGGDIKLFAVIGFVLGVKVLAAAFFFSILIGAVYGAAAVLTGRLAKGQPLPFAPAIAAGSILAYLYGDSIIS
FYMKVALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1022048 ABZM97_RS14040 WP_202327046.1 2843637..2844383(-) (comC) [Bacillus vallismortis strain BL-01]
ATGCTTCCCATTCTATTTATCCTCGGGCTGATCCTTGGCTCGTTTTATTATACGGCCGGGTGCCGTATCCCCTTGCGTAT
ATCTATTGTCAAGCCTCGTTCAGCATGCTCGTTTTGCCGGCGGACATTAACTCCCGCAGAATTAATTCCCATCCTGTCAT
TCCTTTTCCAAAAAGGCAAATGTAAAAGCTGTGGGCATAGAATTTCTTTTAAGTATCCTGCGGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCTGCAGGAATACGCTTTGGCCCGTCTCCGGAGCTGTTTCCCGCTGTTGTGTTTACCTCTCTTCTTAT
CATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTCCCCTTTTTAGCGGCAG
CCAGATTGATTTCTCCGCTTGATTCCTGGTATGCCGGCCTGTTAGGTGCGGCAGCCGGATTTCTTTTCCTGGTCTTAATT
GCCTTACTCACCCATGGGGGAATAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTCGTGCTTGGTGTGAAAGT
GCTGGCAGCTGCCTTTTTCTTTTCTATTTTGATAGGTGCAGTGTATGGAGCGGCAGCCGTCCTGACTGGAAGACTCGCCA
AAGGGCAGCCGCTTCCCTTTGCCCCCGCAATTGCGGCAGGGAGCATTTTAGCCTATTTATACGGCGACTCTATTATTTCT
TTTTATATGAAGGTGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

90.726

100

0.907

Multiple sequence alignment