Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ABZM97_RS13195 Genome accession   NZ_CP160797
Coordinates   2689735..2690109 (-) Length   124 a.a.
NCBI ID   WP_202327123.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2684735..2695109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS13165 (ABZM97_13165) - 2684839..2684979 (+) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -
  ABZM97_RS13170 (ABZM97_13170) - 2685284..2686015 (-) 732 WP_087990788.1 SGNH/GDSL hydrolase family protein -
  ABZM97_RS13175 (ABZM97_13175) - 2686264..2686805 (-) 542 Protein_2546 N-acetylmuramoyl-L-alanine amidase -
  ABZM97_RS13180 (ABZM97_13180) - 2687060..2687686 (+) 627 WP_253268431.1 TVP38/TMEM64 family protein -
  ABZM97_RS13185 (ABZM97_13185) gnd 2687705..2688598 (-) 894 WP_087990790.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  ABZM97_RS13190 (ABZM97_13190) - 2688980..2689702 (+) 723 WP_087990791.1 hypothetical protein -
  ABZM97_RS13195 (ABZM97_13195) nucA/comI 2689735..2690109 (-) 375 WP_202327123.1 sporulation protein Machinery gene
  ABZM97_RS13200 (ABZM97_13200) sigK 2690308..2691036 (+) 729 WP_013308023.1 RNA polymerase sporulation sigma factor SigK -
  ABZM97_RS13205 (ABZM97_13205) - 2691157..2691261 (-) 105 Protein_2552 recombinase -
  ABZM97_RS13210 (ABZM97_13210) - 2691219..2691397 (-) 179 Protein_2553 hypothetical protein -
  ABZM97_RS13215 (ABZM97_13215) - 2691849..2692862 (-) 1014 WP_367387495.1 NADP-dependent oxidoreductase -
  ABZM97_RS13220 (ABZM97_13220) - 2693326..2694075 (-) 750 WP_087990793.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13677.62 Da        Isoelectric Point: 5.7129

>NTDB_id=1022044 ABZM97_RS13195 WP_202327123.1 2689735..2690109(-) (nucA/comI) [Bacillus vallismortis strain BL-01]
MKKWMAGLFLAAAVLLCFMVPQQIQGASLYDKVLTFPLSRYPETGDHIRDAIAEGHSDICTIDRDGADKRRQESLKGIPT
KPGYDRDEWPMAVCEEGGARGAGSWVGNQMSGYPDGTRVLFIVQ

Nucleotide


Download         Length: 375 bp        

>NTDB_id=1022044 ABZM97_RS13195 WP_202327123.1 2689735..2690109(-) (nucA/comI) [Bacillus vallismortis strain BL-01]
ATGAAAAAGTGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTTATGGTTCCGCAGCAGATCCAAGGCGC
TTCTTTGTATGACAAAGTGTTGACTTTTCCGCTGTCTCGTTATCCGGAAACAGGGGATCATATTAGAGATGCGATTGCAG
AGGGACATTCTGATATTTGCACCATCGATAGGGATGGTGCGGACAAAAGGCGGCAGGAATCATTAAAAGGAATTCCGACG
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTTTGTGAGGAGGGCGGCGCGCGCGGGGCCGGCTCGTGGGTTGG
GAATCAAATGAGCGGTTATCCTGACGGCACCAGAGTGCTGTTTATTGTGCAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

55.462

95.968

0.532

Multiple sequence alignment