Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABZM97_RS12945 Genome accession   NZ_CP160797
Coordinates   2646322..2647089 (-) Length   255 a.a.
NCBI ID   WP_087990752.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2641322..2652089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS12925 (ABZM97_12925) - 2641489..2642301 (-) 813 WP_367386874.1 pyruvate, water dikinase regulatory protein -
  ABZM97_RS12930 (ABZM97_12930) ccpN 2642327..2642965 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  ABZM97_RS12935 (ABZM97_12935) glyS 2643099..2645138 (-) 2040 WP_333516575.1 glycine--tRNA ligase subunit beta -
  ABZM97_RS12940 (ABZM97_12940) glyQ 2645131..2646018 (-) 888 WP_087990751.1 glycine--tRNA ligase subunit alpha -
  ABZM97_RS12945 (ABZM97_12945) recO 2646322..2647089 (-) 768 WP_087990752.1 DNA repair protein RecO Machinery gene
  ABZM97_RS12950 (ABZM97_12950) - 2647126..2647269 (-) 144 WP_087990753.1 YqzL family protein -
  ABZM97_RS12955 (ABZM97_12955) era 2647413..2648318 (-) 906 WP_087990754.1 GTPase Era -
  ABZM97_RS12960 (ABZM97_12960) - 2648299..2648709 (-) 411 WP_010330699.1 cytidine deaminase -
  ABZM97_RS12965 (ABZM97_12965) - 2648831..2649202 (-) 372 WP_087990755.1 diacylglycerol kinase family protein -
  ABZM97_RS12970 (ABZM97_12970) ybeY 2649183..2649656 (-) 474 WP_087990756.1 rRNA maturation RNase YbeY -
  ABZM97_RS12975 (ABZM97_12975) pgpH 2649657..2651792 (-) 2136 WP_087990757.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29373.10 Da        Isoelectric Point: 8.5552

>NTDB_id=1022040 ABZM97_RS12945 WP_087990752.1 2646322..2647089(-) (recO) [Bacillus vallismortis strain BL-01]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKVGVMARGAKKTNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAYITELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVIIFIVQMKMLGVMGLYPELNHCVHCKSQDG
SFHFSIRDNGFICHRCFEKDPYRVPIKPQTARLLRLFYYFDLSRLGNVSLKQETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1022040 ABZM97_RS12945 WP_087990752.1 2646322..2647089(-) (recO) [Bacillus vallismortis strain BL-01]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTTACTTTACTGACAAG
AGAACACGGAAAAGTAGGTGTTATGGCAAGAGGCGCCAAAAAAACGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTAATGCAAAAAACAACCGGCCTCGGAACACTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCATATATTACCGAGTTAGTCGACAGAGGCACTGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAATTTATTTTAGAATCGCTTAAACAGCTGAACGAAGGAACAGACCCGGATGTTATCATCTTTA
TCGTTCAAATGAAAATGCTCGGTGTCATGGGGCTGTATCCCGAGCTCAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
AGCTTTCATTTTTCTATCCGTGATAACGGTTTTATTTGCCACCGCTGTTTTGAAAAAGATCCTTACAGGGTTCCGATTAA
ACCGCAAACGGCAAGGCTGTTGAGACTGTTTTATTACTTCGATCTATCAAGGCTGGGCAATGTCTCCTTAAAACAGGAAA
CAAAAGCTGAATTGAAGCAAGTGATTGATTTATATTATGAAGAATACTCAGGGTTATATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAGAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

96.078

100

0.961

Multiple sequence alignment