Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ABZM97_RS11440 Genome accession   NZ_CP160797
Coordinates   2380754..2381374 (+) Length   206 a.a.
NCBI ID   WP_087990504.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2375754..2386374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS11400 (ABZM97_11400) - 2376894..2377400 (-) 507 WP_087990802.1 PTS glucose transporter subunit IIA -
  ABZM97_RS11405 (ABZM97_11405) - 2377538..2377957 (+) 420 WP_087990500.1 Hsp20/alpha crystallin family protein -
  ABZM97_RS11410 (ABZM97_11410) - 2377978..2378346 (-) 369 WP_087990501.1 YppG family protein -
  ABZM97_RS11415 (ABZM97_11415) - 2378533..2378721 (+) 189 WP_003225611.1 YppF family protein -
  ABZM97_RS11420 (ABZM97_11420) - 2378761..2379132 (-) 372 WP_087990803.1 YppE family protein -
  ABZM97_RS11425 (ABZM97_11425) - 2379178..2379423 (-) 246 WP_087990502.1 DUF5446 family protein -
  ABZM97_RS11430 (ABZM97_11430) sspM 2379622..2379726 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ABZM97_RS11435 (ABZM97_11435) - 2379751..2380713 (-) 963 WP_087990503.1 DUF2515 domain-containing protein -
  ABZM97_RS11440 (ABZM97_11440) recU 2380754..2381374 (+) 621 WP_087990504.1 Holliday junction resolvase RecU Machinery gene
  ABZM97_RS11445 (ABZM97_11445) - 2381396..2384137 (+) 2742 WP_087990505.1 PBP1A family penicillin-binding protein -
  ABZM97_RS11450 (ABZM97_11450) - 2384211..2384705 (-) 495 WP_087990506.1 YpoC family protein -
  ABZM97_RS11455 (ABZM97_11455) nth 2384702..2385361 (-) 660 WP_087990507.1 endonuclease III -
  ABZM97_RS11460 (ABZM97_11460) dnaD 2385380..2386078 (-) 699 WP_087990508.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23880.00 Da        Isoelectric Point: 9.4046

>NTDB_id=1022028 ABZM97_RS11440 WP_087990504.1 2380754..2381374(+) (recU) [Bacillus vallismortis strain BL-01]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVMAQDGICFVIISAFDQVYFLEADKLLDFWDRKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1022028 ABZM97_RS11440 WP_087990504.1 2380754..2381374(+) (recU) [Bacillus vallismortis strain BL-01]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
CTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCCGCGGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGATTATAACGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAATGGCTCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAACTGTTGGATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAATTAGAGGAAGCGGCTTATCCGATTTCTCTTGGATACGCACCTAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCGTCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

97.573

100

0.976

Multiple sequence alignment