Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABZM97_RS08850 Genome accession   NZ_CP160797
Coordinates   1789198..1790091 (+) Length   297 a.a.
NCBI ID   WP_367387395.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1784198..1795091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS08830 (ABZM97_08830) - 1784867..1786597 (+) 1731 WP_367387394.1 hypothetical protein -
  ABZM97_RS08835 (ABZM97_08835) - 1786594..1786875 (+) 282 WP_087992069.1 FlhB-like flagellar biosynthesis protein -
  ABZM97_RS08840 (ABZM97_08840) sucC 1787049..1788206 (+) 1158 WP_148961835.1 ADP-forming succinate--CoA ligase subunit beta -
  ABZM97_RS08845 (ABZM97_08845) sucD 1788235..1789137 (+) 903 WP_253269091.1 succinate--CoA ligase subunit alpha -
  ABZM97_RS08850 (ABZM97_08850) dprA 1789198..1790091 (+) 894 WP_367387395.1 DNA-processing protein DprA Machinery gene
  ABZM97_RS08855 (ABZM97_08855) topA 1790278..1792353 (+) 2076 WP_202327679.1 type I DNA topoisomerase -
  ABZM97_RS08860 (ABZM97_08860) trmFO 1792429..1793736 (+) 1308 WP_087992064.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABZM97_RS08865 (ABZM97_08865) xerC 1793803..1794717 (+) 915 WP_087992063.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33072.42 Da        Isoelectric Point: 9.7079

>NTDB_id=1022024 ABZM97_RS08850 WP_367387395.1 1789198..1790091(+) (dprA) [Bacillus vallismortis strain BL-01]
MDQPAACLMNCRINQLLSPSLLLKWWKADPSMSLTSPMLETVTRGKREAAALKNKIEKHYPKLQRVLASYHEQGIIPIPI
SSKQYPFWLQTIYDPPAVLFAKGDMALLSEGRKIGIVGTRNPTAYGMHVVNHLTKELCRKEWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFHHIYPRENLQLANHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDVFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=1022024 ABZM97_RS08850 WP_367387395.1 1789198..1790091(+) (dprA) [Bacillus vallismortis strain BL-01]
TTGGATCAGCCCGCTGCCTGTTTAATGAATTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCATCTATGTCGCTGACATCACCCATGTTAGAAACTGTTACTCGCGGTAAAAGAGAGGCAGCTGCATTAAAAA
ACAAAATAGAAAAACATTATCCAAAGCTTCAGCGTGTACTTGCTTCTTACCATGAGCAAGGCATTATCCCCATCCCGATT
TCTTCTAAGCAATATCCTTTCTGGCTGCAAACCATTTATGATCCCCCCGCCGTCCTGTTTGCAAAGGGTGATATGGCTCT
TCTTTCCGAAGGGAGGAAAATTGGAATTGTAGGTACAAGAAATCCAACAGCTTATGGGATGCATGTTGTCAATCACCTTA
CTAAAGAGCTTTGCCGCAAAGAGTGGGTGATTGTCAGCGGACTTGCGTCTGGGATAGACGGAATGTCCCACGCGGCAAGT
ATTAAGGCGAAGGGGCGGACAATCGGCGTCATTGCAGGGGGATTTCATCACATTTATCCCCGGGAAAACCTTCAGTTAGC
AAATCACATGGCAAAACACCATATCCTTCTGTCAGAGCATCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATCATCAGCGGATTAAGTGAAGGCATTATTGTTGTGCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCA
TATCAAGCACTGGAACAAGGGAGAGAAGTTTTTGCCGTACCCGGTTCATTATTTGATCCTTACGCCGGAGGTCCTATAAA
ACTGATTCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATGTTTTCGAGGAGCTTCCTGAAAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

89.899

100

0.899

Multiple sequence alignment