Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ABZM97_RS07960 Genome accession   NZ_CP160797
Coordinates   1565466..1565744 (+) Length   92 a.a.
NCBI ID   WP_087992212.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1560466..1570744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS07940 (ABZM97_07940) - 1561652..1562563 (+) 912 WP_087992216.1 ketopantoate reductase family protein -
  ABZM97_RS07945 (ABZM97_07945) - 1562594..1563826 (-) 1233 WP_087992215.1 aminopeptidase -
  ABZM97_RS07950 (ABZM97_07950) - 1563938..1564072 (-) 135 WP_071576743.1 protein YkpC -
  ABZM97_RS07955 (ABZM97_07955) mreBH 1564174..1565181 (-) 1008 WP_087992213.1 cell shape-determining protein MreBH -
  ABZM97_RS07960 (ABZM97_07960) abrB 1565466..1565744 (+) 279 WP_087992212.1 transcriptional regulator AbhA Regulator
  ABZM97_RS07965 (ABZM97_07965) kinC 1565890..1567176 (+) 1287 WP_253269053.1 two-component sensor histidine kinase KinC -
  ABZM97_RS07970 (ABZM97_07970) - 1567192..1568019 (+) 828 WP_253269054.1 gamma-glutamylcyclotransferase -
  ABZM97_RS07975 (ABZM97_07975) ktrC 1568091..1568756 (+) 666 WP_087992209.1 Ktr system potassium transporter KtrC -
  ABZM97_RS07980 (ABZM97_07980) ade 1568912..1570645 (+) 1734 WP_087992208.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10229.00 Da        Isoelectric Point: 5.1765

>NTDB_id=1022023 ABZM97_RS07960 WP_087992212.1 1565466..1565744(+) (abrB) [Bacillus vallismortis strain BL-01]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENTEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1022023 ABZM97_RS07960 WP_087992212.1 1565466..1565744(+) (abrB) [Bacillus vallismortis strain BL-01]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGGCGCATTGTCATGCCGATAGAATTAAGACGAGCACTGGA
TATTGCTATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTATAAACCTCATGGCGTTT
GTTTAATGACCGGAGAAATCACTTCAGAAAATACTGAATACGGCAACGGTAAAATTACGTTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTCTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment