Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ABZM97_RS05790 Genome accession   NZ_CP160797
Coordinates   1165479..1166057 (+) Length   192 a.a.
NCBI ID   WP_087991281.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1160479..1171057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS05770 (ABZM97_05770) hemAT 1160993..1162288 (-) 1296 WP_202328482.1 heme-based aerotactic transducer HemAT -
  ABZM97_RS05775 (ABZM97_05775) - 1162428..1163957 (-) 1530 WP_087991279.1 FAD-dependent oxidoreductase -
  ABZM97_RS05780 (ABZM97_05780) - 1164069..1164926 (+) 858 WP_087991280.1 SDR family oxidoreductase -
  ABZM97_RS05785 (ABZM97_05785) - 1164953..1165186 (-) 234 WP_003239440.1 IDEAL domain-containing protein -
  ABZM97_RS05790 (ABZM97_05790) comK 1165479..1166057 (+) 579 WP_087991281.1 competence transcription factor ComK Regulator
  ABZM97_RS05795 (ABZM97_05795) - 1166102..1167001 (-) 900 WP_367387485.1 SDR family oxidoreductase -
  ABZM97_RS05800 (ABZM97_05800) - 1167209..1167478 (+) 270 WP_087991283.1 excalibur calcium-binding domain-containing protein -
  ABZM97_RS05805 (ABZM97_05805) - 1167525..1168994 (-) 1470 WP_087991284.1 sodium:solute symporter -
  ABZM97_RS05810 (ABZM97_05810) - 1168991..1169191 (-) 201 WP_087991285.1 DUF3311 domain-containing protein -
  ABZM97_RS05815 (ABZM97_05815) - 1169416..1169778 (-) 363 WP_087991286.1 hypothetical protein -
  ABZM97_RS05820 (ABZM97_05820) - 1169929..1170552 (+) 624 WP_087991287.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22350.68 Da        Isoelectric Point: 8.0130

>NTDB_id=1022009 ABZM97_RS05790 WP_087991281.1 1165479..1166057(+) (comK) [Bacillus vallismortis strain BL-01]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVYVKEFKPTAFDDTEVTFSNGKTMELPISCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1022009 ABZM97_RS05790 WP_087991281.1 1165479..1166057(+) (comK) [Bacillus vallismortis strain BL-01]
ATGAGTCAGAAAACTGACGCACCTTTAGAATCGTATGAAGTAAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATTGA
TGGCAAAATCTGTTCCAAAATTATTGAAAAAGACTGCGTATTTTATGTCAGCATGAAGCCGCTGCAAATCGTCGACAGAA
GCTGCCGTTTTTTCGGATCAAGCTATGCGGGAAGAAAAGCGGGAACTTATGAAGTGACAAAAATTTCACACAAACCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGTACGTAAAAGAATTCAAACCGACTGCATTCGACGATACGGAAGTGACATTTTCGAACGGCAAAACAATGGAGCTGC
CGATCTCCTGCAATTCGTTCGAAAACCAGGTTTACCGGACAGCGTGGCTCAGAACCAAATTCCAGGACAGAATCGAACAC
CGCGTGCCAAAACGGCAGGAATTTATGCTGTATCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGAGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

96.875

100

0.969

Multiple sequence alignment