Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ABZM97_RS00245 Genome accession   NZ_CP160797
Coordinates   44585..44869 (-) Length   94 a.a.
NCBI ID   WP_087993958.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39585..49869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS00205 (ABZM97_00205) darA 39610..39939 (+) 330 WP_148964448.1 cyclic di-AMP receptor DarA -
  ABZM97_RS00210 (ABZM97_00210) - 39952..40392 (+) 441 WP_087993952.1 YaaR family protein -
  ABZM97_RS00215 (ABZM97_00215) holB 40404..41393 (+) 990 WP_087993953.1 DNA polymerase III subunit delta' -
  ABZM97_RS00220 (ABZM97_00220) ricT 41396..42223 (+) 828 WP_060397760.1 competence/sporulation regulator complex protein RicT -
  ABZM97_RS00225 (ABZM97_00225) yabA 42238..42597 (+) 360 WP_087993954.1 replication initiation-control protein YabA -
  ABZM97_RS00230 (ABZM97_00230) - 42656..43399 (+) 744 WP_087993955.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ABZM97_RS00235 (ABZM97_00235) - 43386..43685 (+) 300 WP_087993956.1 GIY-YIG nuclease family protein -
  ABZM97_RS00240 (ABZM97_00240) rsmI 43660..44538 (+) 879 WP_087993957.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ABZM97_RS00245 (ABZM97_00245) abrB 44585..44869 (-) 285 WP_087993958.1 transition state genes transcriptional regulator AbrB Regulator
  ABZM97_RS00250 (ABZM97_00250) metG 45370..47364 (+) 1995 WP_202329173.1 methionine--tRNA ligase -
  ABZM97_RS00255 (ABZM97_00255) - 47443..48210 (+) 768 WP_087991884.1 TatD family hydrolase -
  ABZM97_RS00260 (ABZM97_00260) - 48366..49679 (+) 1314 WP_087991883.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10523.25 Da        Isoelectric Point: 6.3482

>NTDB_id=1021993 ABZM97_RS00245 WP_087993958.1 44585..44869(-) (abrB) [Bacillus vallismortis strain BL-01]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSQEGAE
QIISEIQKQLQNQK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=1021993 ABZM97_RS00245 WP_087993958.1 44585..44869(-) (abrB) [Bacillus vallismortis strain BL-01]
ATGAAATCTACTGGTATTGTGCGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAATTGCGTCGTACTCTTGG
AATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCTGGCGGTAAATTGGTTCTTAGCCAAGAAGGCGCTGAG
CAAATCATCAGCGAAATCCAAAAGCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

96.809

100

0.968

Multiple sequence alignment