Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ABZM97_RS00020 Genome accession   NZ_CP160797
Coordinates   3031..4143 (+) Length   370 a.a.
NCBI ID   WP_202327737.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS00005 (ABZM97_00005) dnaA 1..1341 (+) 1341 WP_039074864.1 chromosomal replication initiator protein DnaA -
  ABZM97_RS00010 (ABZM97_00010) dnaN 1533..2669 (+) 1137 WP_202327738.1 DNA polymerase III subunit beta -
  ABZM97_RS00015 (ABZM97_00015) rlbA 2800..3015 (+) 216 WP_003219264.1 ribosome maturation protein RlbA -
  ABZM97_RS00020 (ABZM97_00020) recF 3031..4143 (+) 1113 WP_202327737.1 DNA replication/repair protein RecF Machinery gene
  ABZM97_RS00025 (ABZM97_00025) remB 4161..4406 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  ABZM97_RS00030 (ABZM97_00030) gyrB 4461..6377 (+) 1917 WP_148963437.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ABZM97_RS00035 (ABZM97_00035) gyrA 6588..9053 (+) 2466 WP_087993740.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42329.35 Da        Isoelectric Point: 7.6873

>NTDB_id=1021991 ABZM97_RS00020 WP_202327737.1 3031..4143(+) (recF) [Bacillus vallismortis strain BL-01]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVASKVVVKRLQFTAQLEKWAQPIHTGISRGLEELTLKYSTALEVSDPKDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1021991 ABZM97_RS00020 WP_202327737.1 3031..4143(+) (recF) [Bacillus vallismortis strain BL-01]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTCCAATTTGAAAACAAAGTAAATGT
CATCATCGGAGAAAACGCCCAGGGGAAAACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGAGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAACCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATCATGTTCGCGCCGGAAGATTTAAATCTGGTAAAGGGGAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATTGGACAGGTTTCTCCTGTCTACCTGCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGA
AATCATTTTTTGAAGCAGCTGCAAACAAGAAAACAAACTGACAGAACGATGCTCGATGTTTTGACCGATCAGCTTGTAGA
AGTTGCGTCAAAAGTCGTTGTAAAACGCCTGCAGTTTACAGCGCAGCTTGAAAAATGGGCGCAGCCTATTCATACAGGCA
TATCAAGAGGGCTTGAGGAGCTGACCCTGAAGTACAGTACGGCTCTTGAGGTATCAGATCCTAAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGCGGTGTTACGCTGTCAGGTCCTCATCG
TGACGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCACAAGGACAGCAGCGAACGACGGCATTGT
CCCTTAAACTTGCGGAGATTGACCTGATCCATGAGGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTATTGAGT
GAGCTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

98.649

100

0.986

Multiple sequence alignment