Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DQM63_RS00230 Genome accession   NZ_LS483385
Coordinates   29625..30398 (+) Length   257 a.a.
NCBI ID   WP_002901939.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC7863     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 24625..35398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM63_RS00210 (NCTC7863_00041) - 25496..26461 (+) 966 WP_002894321.1 ribose-phosphate diphosphokinase -
  DQM63_RS00215 (NCTC7863_00042) - 26774..27343 (+) 570 WP_002901936.1 LPKTxAVK-anchored surface protein -
  DQM63_RS00220 (NCTC7863_00043) srtB 27438..28280 (+) 843 WP_002901937.1 class B sortase, LPKTxAVK-specific -
  DQM63_RS00225 (NCTC7863_00044) - 28460..29632 (+) 1173 WP_002901938.1 pyridoxal phosphate-dependent aminotransferase -
  DQM63_RS00230 (NCTC7863_00045) recO 29625..30398 (+) 774 WP_002901939.1 DNA repair protein RecO Machinery gene
  DQM63_RS00235 (NCTC7863_00046) plsX 30404..31402 (+) 999 WP_002901940.1 phosphate acyltransferase PlsX -
  DQM63_RS00240 (NCTC7863_00047) - 31405..31653 (+) 249 WP_002898839.1 acyl carrier protein -
  DQM63_RS00245 (NCTC7863_00048) purC 31805..32512 (+) 708 WP_002901941.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29726.01 Da        Isoelectric Point: 5.8452

>NTDB_id=1021964 DQM63_RS00230 WP_002901939.1 29625..30398(+) (recO) [Streptococcus sanguinis strain NCTC7863]
MLKSLTSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHASKSKLAPVIQPLTAANLLMKINDDGLSYIEDYQNVVTYH
RINEDLFIMAYASYVAALADASLQDNQSDPALFAFLQKTLELMNNGLDYEVLTNIFEIQILSRFGVSLNFHDCAFCHRTG
LPFDFSFKYSGVLCPDHYHQDERRCHLNPNLPFLLDQFQAVRFSELETISLKPDIKKQLRDFIDLLYDEYVGIHLKSKKF
IDSLGDWGSILKDKNEE

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1021964 DQM63_RS00230 WP_002901939.1 29625..30398(+) (recO) [Streptococcus sanguinis strain NCTC7863]
ATGCTTAAATCTCTAACAAGTCAAGGTCTGGTTCTCTATAACCGCAATTTCCGCGAGGATGATAAGCTGGTAAAGATCTT
TACGGAACAGGCTGGTAAGCGTATGTTTTTCGTCAAGCATGCTAGTAAATCCAAGCTAGCACCCGTCATTCAGCCTTTGA
CTGCGGCGAACTTGCTGATGAAAATCAATGATGATGGTCTTAGCTATATCGAGGACTATCAGAATGTAGTCACCTATCAT
CGCATCAATGAGGACTTATTCATCATGGCCTATGCCAGTTATGTGGCGGCCTTGGCAGATGCCAGTCTTCAGGACAATCA
GTCGGATCCGGCGCTCTTTGCTTTTCTGCAGAAAACCCTGGAGCTGATGAATAATGGTCTGGACTATGAAGTGCTGACCA
ATATCTTTGAGATTCAGATTTTGTCACGTTTTGGAGTTTCACTGAACTTCCATGATTGTGCCTTTTGTCATCGGACGGGT
CTGCCTTTTGACTTCTCTTTCAAATATAGCGGAGTTCTTTGCCCTGATCATTACCATCAGGATGAACGGCGATGCCATCT
GAATCCCAATCTTCCTTTTCTGCTGGACCAATTTCAGGCGGTCCGCTTTAGCGAATTAGAGACCATTTCTTTGAAGCCAG
ATATTAAAAAGCAGCTGCGGGATTTTATCGACCTGCTCTATGATGAATATGTCGGCATCCATCTCAAATCCAAAAAATTT
ATAGATTCTCTGGGGGACTGGGGAAGCATTTTAAAAGATAAGAACGAGGAATAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(5-74)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

76.172

99.611

0.759