Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   DQM67_RS09445 Genome accession   NZ_LS483383
Coordinates   1851121..1851519 (-) Length   132 a.a.
NCBI ID   WP_005591539.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1846121..1856519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS09430 (NCTC12479_01826) - 1847632..1848522 (+) 891 WP_005591542.1 RluA family pseudouridine synthase -
  DQM67_RS09435 (NCTC12479_01827) - 1848846..1850039 (-) 1194 WP_005591541.1 acetate kinase -
  DQM67_RS09440 (NCTC12479_01828) comGH 1850075..1851040 (-) 966 WP_005591540.1 class I SAM-dependent methyltransferase Machinery gene
  DQM67_RS09445 (NCTC12479_01829) comGG 1851121..1851519 (-) 399 WP_005591539.1 competence type IV pilus minor pilin ComGG Machinery gene
  DQM67_RS09450 (NCTC12479_01830) comGF/cglF 1851500..1851937 (-) 438 WP_005591538.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQM67_RS09455 (NCTC12479_01831) comGE/cglE 1851921..1852214 (-) 294 WP_174263560.1 competence type IV pilus minor pilin ComGE Machinery gene
  DQM67_RS09460 (NCTC12479_01832) comGD 1852180..1852614 (-) 435 WP_037586086.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQM67_RS09465 (NCTC12479_01833) comGC 1852574..1852891 (-) 318 WP_005591535.1 competence type IV pilus major pilin ComGC Machinery gene
  DQM67_RS09470 (NCTC12479_01834) comGB 1852888..1853904 (-) 1017 WP_255209852.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQM67_RS09475 (NCTC12479_01835) comGA 1853852..1854793 (-) 942 WP_005591533.1 competence type IV pilus ATPase ComGA Machinery gene
  DQM67_RS09480 (NCTC12479_01836) - 1854879..1855250 (-) 372 WP_005591532.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15055.09 Da        Isoelectric Point: 10.1357

>NTDB_id=1021844 DQM67_RS09445 WP_005591539.1 1851121..1851519(-) (comGG) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MSKIKVKAGILLYALFMAAVFSLLLQFYLNRQVANQRLFQANRERAEAYALAVLTKETATEENGQLAFDQGSTHYRRQGN
MLEVSSQLANQKSYSFYFESKKELEKKDKEAKDSKDTKKSKAPSPSTDKRSD

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1021844 DQM67_RS09445 WP_005591539.1 1851121..1851519(-) (comGG) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
GTGTCCAAGATAAAAGTTAAGGCAGGCATCTTGCTTTATGCCCTCTTTATGGCAGCGGTCTTTAGCTTGCTCTTGCAATT
TTATCTGAACCGGCAGGTAGCCAATCAGCGTCTCTTTCAAGCCAATAGGGAGCGGGCAGAAGCCTATGCCTTGGCTGTTT
TGACCAAGGAGACTGCCACAGAGGAGAACGGGCAATTAGCCTTTGACCAAGGGAGCACCCATTATCGCAGGCAGGGAAAT
ATGCTGGAAGTCAGCAGCCAACTCGCCAATCAGAAGAGTTATTCTTTCTATTTTGAGAGCAAAAAGGAGCTAGAGAAGAA
GGACAAGGAAGCTAAAGACTCCAAAGATACTAAAAAAAGTAAAGCGCCCTCTCCTTCAACCGACAAGAGAAGCGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

43.966

87.879

0.386
  comGG Streptococcus mutans UA159

43.966

87.879

0.386