Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   DQM67_RS03480 Genome accession   NZ_LS483383
Coordinates   688291..691962 (+) Length   1223 a.a.
NCBI ID   WP_005590654.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 683291..696962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS03470 (NCTC12479_00664) tuf 683671..684867 (+) 1197 WP_005590656.1 elongation factor Tu -
  DQM67_RS03475 (NCTC12479_00665) rexB 685007..688294 (+) 3288 WP_005590655.1 ATP-dependent nuclease subunit B Machinery gene
  DQM67_RS03480 (NCTC12479_00666) rexA 688291..691962 (+) 3672 WP_005590654.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  DQM67_RS03485 (NCTC12479_00667) - 692103..693101 (+) 999 WP_005590653.1 glycosyltransferase family 4 protein -
  DQM67_RS03490 (NCTC12479_00668) - 693103..694416 (+) 1314 WP_005590651.1 glycosyltransferase family 4 protein -
  DQM67_RS03495 (NCTC12479_00669) - 694453..694818 (+) 366 WP_005592499.1 hypothetical protein -
  DQM67_RS10445 - 694955..695078 (+) 124 Protein_622 AAA family ATPase -
  DQM67_RS03500 (NCTC12479_00671) - 695151..695507 (+) 357 WP_005590649.1 hypothetical protein -

Sequence

Protein


Download         Length: 1223 a.a.        Molecular weight: 140365.79 Da        Isoelectric Point: 4.9908

>NTDB_id=1021787 DQM67_RS03480 WP_005590654.1 688291..691962(+) (rexA) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MRRIPFLNEQDILVKQAEEAASDKPQKRTPEQIQAIYSSGQNILVSASAGSGKTYVMVQRIIDQILRGVEVSQLFISTFT
VKAAGELKERLEKEMSLVIKETQDQELRQHLAQQLAEIANADIGTMDAFTQKVVNKYGYLLGLAPHFRILQSASEQLILQ
NEVFDQLFDTYYESDQQELFSRLVKNFTGKRKDISGFRQQIYSIYSFLQSTSNPRKWLEDTFLLGYETSDFGAERERILS
EARQSLLDLEDFFQSHLAHEGQAFAGAKYQENIQAALDILAELTEQTGSEQLLDLIQRFLELAKTSNHQAFTARVGKNAD
ELKKEIAQAYNEARKPLIERIKELDVRLYHLNFMEQHQSEALPLLDLLRDFVRDFSQAYLERKVAENAFEFGDISHFAIE
ILENYPEVRRFYQDKYHEVMVDEYQDTNHTQERMLELLARENNRFMVGDIKQSIYRFRQVDPQIFNDKFKLYQADPSQGK
LIILKENFRSHIEVLEATNDVFKRLMDEEIGEIDYNETHYLVAGNPAKREPNPANQAEFLLYDGSADSEEEDSDQGLPSI
SAGEVALVIKEIIRLHNQEGVDFKDITLLTASRTRNDLILAEFDRHHIPIVPDDGETNYLQSVEVMVMLDTLRTINNPLN
DYALTALLKSPMFDFDEDELARLALQASSTKSMENLYEKLRNALADQGLGPQLIHGELRKKLQHFQETLNDWRSYSKTHS
LYDLIWKIYQDRFYYDMVGALPNGEQRQANLYALSLRANDYEKSSFKGLSRFISMIDRILKNEHDLASVPLAAPKNAVQL
VTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRQKGIGIKYVADVDLEAQGPHAPKQIRISMETLPYQQNAEELKLA
SLSEQMRLLYVAMTRAETKLYLVGKGKQAKLQERKWGTSQNGRLSSSLRSQLTNFQDWLYAIQSVFGKENLAYQTRFVTD
QELTDEQIGLVEQVDPIPVDDLTGNRQSEDIRRALDILENVDRLNSLYQAAIELPSVRTPSQIKKFYEPVMDSEGLDIMD
APRSHQTQLTFDLPDFGKKKQVTGAQIGSAVHELMQRIPLDRPITKTSIRQALAQVQVDAAVKKEIDLAKIEAFFATELG
QLIQHQSNHLHREAPFAMLKQDPASGQDFVVRGILDGYLLFDDHIVLFDYKTDRYHDPAELVERYRAQLDLYAEALSRSY
GLSQVDKYLILLGGTELQVVKVD

Nucleotide


Download         Length: 3672 bp        

>NTDB_id=1021787 DQM67_RS03480 WP_005590654.1 688291..691962(+) (rexA) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGAGACGGATTCCCTTTTTAAACGAGCAGGATATCCTAGTCAAGCAAGCTGAGGAAGCTGCCTCTGACAAGCCTCAAAA
GCGCACACCAGAGCAGATCCAGGCTATCTACTCCTCTGGTCAGAATATTCTCGTTTCGGCTTCGGCTGGCTCTGGTAAGA
CCTATGTTATGGTTCAGCGGATCATTGACCAGATTCTCAGAGGTGTGGAGGTCAGCCAACTCTTCATCTCCACCTTTACT
GTTAAGGCGGCAGGTGAGCTCAAAGAACGGCTGGAGAAGGAGATGAGTCTGGTAATTAAGGAGACGCAAGATCAGGAACT
CCGCCAGCATCTGGCTCAGCAGTTGGCTGAGATTGCCAATGCAGATATTGGTACCATGGATGCTTTTACCCAGAAAGTAG
TCAATAAGTACGGCTATTTGCTGGGGCTGGCACCGCATTTTCGGATTTTACAGTCGGCCAGTGAGCAGCTCATTCTGCAA
AATGAAGTCTTTGACCAGCTTTTCGATACCTACTATGAGAGTGATCAGCAGGAATTATTCAGTCGCTTGGTCAAAAATTT
CACTGGTAAGCGCAAGGACATTTCTGGTTTCCGCCAGCAGATTTATAGTATTTATAGCTTTCTCCAGTCTACCAGCAATC
CACGGAAATGGTTGGAAGATACTTTTCTTCTAGGCTATGAAACCAGTGATTTTGGAGCAGAGCGGGAGCGAATTCTCTCT
GAGGCTAGGCAGTCTTTGCTGGATTTGGAAGATTTTTTCCAGAGCCATTTGGCTCATGAAGGTCAGGCATTTGCTGGGGC
TAAGTATCAGGAAAATATTCAGGCAGCCTTAGATATCTTGGCTGAGCTGACAGAGCAGACTGGATCTGAACAGTTGCTAG
ACTTGATTCAGCGCTTTTTAGAATTGGCCAAGACCTCTAACCATCAGGCTTTTACTGCCCGAGTTGGTAAAAATGCAGAC
GAGCTCAAAAAAGAGATAGCCCAAGCCTATAATGAAGCCCGTAAGCCCTTGATAGAGCGAATTAAAGAGCTGGATGTCCG
CCTCTACCATCTGAACTTTATGGAGCAGCATCAATCGGAAGCTCTTCCTCTATTGGATTTGTTACGCGATTTTGTCCGAG
ATTTCTCACAAGCTTATTTGGAGCGCAAGGTAGCAGAAAATGCCTTTGAATTTGGTGATATCAGCCATTTTGCAATTGAG
ATTTTAGAAAATTATCCAGAAGTGCGGCGTTTTTATCAAGATAAGTACCATGAGGTCATGGTCGATGAGTATCAAGACAC
CAACCATACTCAGGAGCGAATGCTGGAATTGCTGGCTCGAGAAAATAATCGCTTTATGGTTGGCGACATTAAGCAGTCCA
TCTATCGATTCCGTCAGGTAGATCCGCAGATTTTTAACGATAAATTTAAACTCTATCAGGCCGATCCTAGTCAGGGCAAG
CTGATTATCCTCAAGGAAAATTTCCGCAGTCACATCGAGGTGCTGGAAGCGACCAATGATGTCTTTAAACGACTCATGGA
CGAGGAAATCGGCGAGATTGATTACAATGAGACCCACTACTTGGTGGCGGGAAATCCAGCCAAACGGGAGCCAAATCCAG
CCAATCAAGCGGAATTTCTCCTTTATGATGGCAGTGCCGATAGCGAAGAAGAGGATTCTGACCAAGGTCTGCCCAGCATT
TCAGCGGGTGAGGTGGCCTTGGTAATCAAAGAAATTATCCGACTTCATAATCAAGAAGGAGTGGATTTCAAGGATATTAC
CTTGCTGACAGCTTCGCGGACCCGCAATGATCTGATTTTGGCAGAGTTTGACAGGCATCATATCCCGATTGTGCCTGATG
ACGGCGAGACCAATTATCTCCAGTCAGTAGAGGTTATGGTGATGCTGGATACCCTGCGGACCATTAACAATCCTCTCAAT
GACTATGCCCTGACCGCTCTCCTAAAGTCGCCAATGTTTGACTTTGATGAGGATGAATTGGCTCGGCTAGCCTTGCAAGC
CTCCAGTACCAAGTCTATGGAAAATCTCTACGAAAAGCTGAGGAATGCTCTGGCTGATCAAGGTCTGGGACCTCAGCTCA
TCCATGGTGAATTGCGTAAGAAACTGCAGCACTTCCAGGAAACGCTGAATGACTGGCGCAGCTATTCCAAGACCCATTCT
CTCTATGATTTAATCTGGAAGATTTATCAGGATCGTTTTTACTACGATATGGTCGGGGCTCTACCCAACGGTGAGCAGCG
TCAAGCTAATCTCTATGCCCTGTCCTTGAGGGCCAACGACTATGAAAAGTCGAGTTTCAAGGGGCTATCCCGCTTTATCA
GCATGATTGACAGAATTTTGAAAAATGAGCACGATTTGGCCAGTGTCCCCCTGGCTGCTCCGAAAAATGCGGTCCAGCTA
GTGACTATTCATAAGAGTAAGGGGCTGGAGTTCAAATATGTCTTTCTACTCAATATGGACAAGGCCTTCAACCGTCAGGA
TAGCAGCTCTGCTATTATCCTCAGCCGACAAAAGGGTATTGGAATCAAATATGTGGCTGATGTGGACCTTGAGGCTCAGG
GTCCTCATGCGCCTAAGCAGATCCGTATTTCTATGGAGACCCTACCTTATCAGCAGAATGCCGAAGAACTCAAGCTGGCG
AGCCTGTCTGAGCAGATGCGTCTGCTCTATGTGGCCATGACGCGGGCTGAAACCAAGCTCTATCTGGTCGGCAAGGGCAA
GCAAGCTAAGCTCCAAGAGCGCAAGTGGGGGACTAGCCAAAATGGGCGCTTATCTAGCAGTCTTCGAAGCCAGCTGACTA
ATTTTCAGGATTGGCTCTATGCTATCCAGTCTGTGTTTGGAAAGGAAAATCTGGCTTATCAAACCCGCTTTGTGACTGAT
CAGGAGCTGACAGACGAACAGATTGGCTTAGTAGAGCAGGTTGATCCTATTCCAGTAGATGATTTGACGGGCAACCGTCA
GTCAGAAGATATCCGCCGAGCTCTGGATATCTTGGAGAATGTAGACCGGCTCAACAGTCTCTATCAAGCGGCTATTGAAT
TGCCTAGTGTCCGCACGCCCAGCCAAATCAAGAAGTTCTATGAGCCAGTTATGGACTCAGAAGGGCTGGACATTATGGAT
GCGCCTCGAAGCCATCAGACTCAGCTGACTTTTGATTTGCCTGATTTTGGTAAGAAGAAGCAAGTCACGGGAGCCCAAAT
AGGTTCTGCTGTTCATGAACTCATGCAACGGATTCCGCTGGATCGTCCTATTACTAAGACTAGCATTCGTCAAGCCTTGG
CTCAGGTTCAGGTAGATGCGGCAGTCAAGAAAGAGATTGATTTAGCGAAGATTGAGGCCTTTTTCGCTACAGAACTAGGT
CAGCTAATCCAGCATCAGTCCAATCATCTCCATCGGGAAGCACCTTTTGCCATGCTCAAGCAGGATCCAGCAAGTGGTCA
AGACTTTGTCGTTCGGGGAATCTTGGATGGCTACCTGCTCTTTGATGATCACATTGTCCTCTTTGACTATAAGACTGACC
GCTATCATGATCCGGCAGAGTTGGTGGAGCGTTACCGAGCTCAGCTGGACCTCTATGCTGAAGCACTCAGCCGTTCCTAT
GGTCTTAGCCAAGTAGACAAATATTTGATTCTACTAGGAGGGACTGAACTGCAGGTGGTCAAGGTGGACTAG

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1041-1199)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-472)

UvrD-like helicase C-terminal domain (UvrD_C)

(482-902)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

58.265

99.918

0.582