Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrR   Type   Regulator
Locus tag   SMUFR_RS04260 Genome accession   NZ_CP007016
Coordinates   874473..874907 (+) Length   144 a.a.
NCBI ID   WP_002263292.1    Uniprot ID   Q8DUK6
Organism   Streptococcus mutans UA159-FR     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 869473..879907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUFR_RS04230 (SMUFR_0794) gdhA 869655..871004 (+) 1350 WP_002263849.1 NADP-specific glutamate dehydrogenase -
  SMUFR_RS04235 (SMUFR_0795) - 871116..871499 (-) 384 WP_002263287.1 DUF3021 family protein -
  SMUFR_RS10680 (SMUFR_0796) queF 871608..872096 (-) 489 WP_002263288.1 preQ(1) synthase -
  SMUFR_RS10685 (SMUFR_0797) queE 872109..872825 (-) 717 WP_002263289.1 7-carboxy-7-deazaguanine synthase QueE -
  SMUFR_RS04250 (SMUFR_0798) queD 872822..873268 (-) 447 WP_002263290.1 6-carboxytetrahydropterin synthase QueD -
  SMUFR_RS04255 (SMUFR_0799) queC 873268..873921 (-) 654 WP_002263291.1 7-cyano-7-deazaguanine synthase QueC -
  SMUFR_RS04260 (SMUFR_0800) rcrR 874473..874907 (+) 435 WP_002263292.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SMUFR_RS04265 (SMUFR_0801) rcrP 874911..876713 (+) 1803 WP_002263293.1 ABC transporter ATP-binding protein Regulator
  SMUFR_RS04270 (SMUFR_0802) rcrQ 876703..878457 (+) 1755 WP_002263294.1 ABC transporter ATP-binding protein Regulator
  SMUFR_RS04275 (SMUFR_0803) tpx 878654..879139 (+) 486 WP_002263295.1 thiol peroxidase -
  SMUFR_RS04280 (SMUFR_0804) - 879276..879746 (+) 471 WP_002267997.1 hypothetical protein -

Sequence


Protein


Download         Length: 144 a.a.        Molecular weight: 16720.58 Da        Isoelectric Point: 10.5126

>NTDB_id=102149 SMUFR_RS04260 WP_002263292.1 874473..874907(+) (rcrR) [Streptococcus mutans UA159-FR]
MKEPFSEFKNLITATERYIQELSKSHGVEHLSGPQGWTVMFLKDNQGKEIFIKDIEKRLDISKSVTSNLIKRMEKNGFIS
VIPSRKDRRYKQIVLTPLGQEKAGKITVFLTDLKKLLLKDISQEDLSVARKVFKQIKQNLEKKE

Nucleotide


Download         Length: 435 bp        

>NTDB_id=102149 SMUFR_RS04260 WP_002263292.1 874473..874907(+) (rcrR) [Streptococcus mutans UA159-FR]
ATGAAGGAGCCTTTTAGTGAATTTAAAAACCTCATTACAGCAACAGAAAGATATATTCAAGAATTATCCAAAAGCCATGG
TGTTGAACATCTGTCCGGACCTCAGGGATGGACAGTTATGTTTTTAAAGGATAATCAAGGAAAGGAAATTTTTATTAAAG
ATATTGAAAAAAGGTTAGATATCTCAAAATCTGTGACCAGTAATCTCATTAAACGAATGGAAAAAAATGGTTTTATTTCT
GTTATTCCTTCCAGAAAAGACAGACGATACAAGCAAATTGTTTTAACGCCATTAGGTCAGGAAAAAGCTGGAAAAATAAC
TGTTTTTTTAACAGATCTTAAAAAGTTGCTTCTAAAAGATATTAGTCAGGAAGACTTATCAGTTGCTCGGAAGGTTTTTA
AACAAATCAAACAAAATTTAGAAAAGAAGGAGTAA

Domains


Predicted by InterProScan.

(31-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q8DUK6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

100

100

1


Multiple sequence alignment