Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DQM97_RS00225 Genome accession   NZ_LS483378
Coordinates   31992..32747 (+) Length   251 a.a.
NCBI ID   WP_002959622.1    Uniprot ID   A0ABM6W513
Organism   Streptococcus sobrinus strain NCTC12279     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 26992..37747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM97_RS00205 (NCTC12279_00040) mreD 27685..28221 (+) 537 WP_050585021.1 rod shape-determining protein MreD -
  DQM97_RS00210 (NCTC12279_00041) - 28312..29637 (+) 1326 WP_002959628.1 CHAP domain-containing protein -
  DQM97_RS00215 (NCTC12279_00042) - 29754..30722 (+) 969 WP_002959627.1 ribose-phosphate diphosphokinase -
  DQM97_RS00220 (NCTC12279_00043) - 30827..32002 (+) 1176 WP_002959625.1 pyridoxal phosphate-dependent aminotransferase -
  DQM97_RS00225 (NCTC12279_00044) recO 31992..32747 (+) 756 WP_002959622.1 DNA repair protein RecO Machinery gene
  DQM97_RS00230 (NCTC12279_00045) plsX 32976..33974 (+) 999 WP_002959620.1 phosphate acyltransferase PlsX -
  DQM97_RS00235 (NCTC12279_00046) - 34077..34322 (+) 246 WP_002959619.1 acyl carrier protein -
  DQM97_RS00240 (NCTC12279_00047) - 34890..35024 (+) 135 WP_021674295.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  DQM97_RS10995 (NCTC12279_00048) - 35054..35182 (+) 129 WP_019768929.1 hypothetical protein -
  DQM97_RS10755 (NCTC12279_00049) - 35237..35380 (+) 144 WP_002959617.1 hypothetical protein -
  DQM97_RS00245 (NCTC12279_00050) - 35642..36463 (+) 822 WP_019768928.1 ABC transporter ATP-binding protein -
  DQM97_RS00250 (NCTC12279_00051) - 36453..37172 (+) 720 WP_002959613.1 ABC transporter permease -
  DQM97_RS11000 (NCTC12279_00053) - 37414..37542 (+) 129 WP_019768926.1 hypothetical protein -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29254.65 Da        Isoelectric Point: 6.4945

>NTDB_id=1021352 DQM97_RS00225 WP_002959622.1 31992..32747(+) (recO) [Streptococcus sobrinus strain NCTC12279]
MQTKESRGLVLFNRNYREDDKLVKIFTETAGKRMFFVKHISHSKLASVIQPLTLADFFMKINDSGLSYIDDVKEVQTFKT
INADIFRLSYASYIVALADAAIEDGRHDAPLFAFLVKTLELMEQGLDYEILTNIFEIQILDRFGIQLNFHDCALCHCAGL
PFDFSYKYSGLLCPQHYEKDSYRSHLDPNVPYLLDRFQSISFEDLQTISVKPEMKQRLRRFIDGIYDNYLGLHLRSKKFI
DDLSKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=1021352 DQM97_RS00225 WP_002959622.1 31992..32747(+) (recO) [Streptococcus sobrinus strain NCTC12279]
ATGCAGACTAAGGAATCACGTGGTCTGGTCCTCTTTAACCGCAACTATCGTGAGGATGATAAGCTGGTTAAGATCTTTAC
AGAGACAGCAGGCAAACGAATGTTTTTCGTGAAACATATCAGCCACTCTAAGTTGGCATCAGTCATCCAGCCCTTGACCC
TTGCGGATTTTTTCATGAAAATCAATGATTCTGGGCTTTCTTATATTGATGATGTTAAGGAGGTCCAGACCTTCAAGACC
ATCAATGCGGATATTTTTCGCTTATCCTATGCCTCTTATATCGTTGCTCTGGCGGACGCTGCTATTGAAGATGGTCGTCA
TGACGCTCCCCTTTTTGCCTTCTTGGTTAAAACTTTAGAATTGATGGAGCAGGGGTTGGATTATGAGATTTTGACCAATA
TTTTTGAAATTCAAATTTTGGACCGCTTTGGGATTCAATTGAATTTTCATGACTGTGCTCTTTGTCACTGCGCTGGTCTT
CCTTTTGATTTTTCTTACAAGTATTCGGGACTTCTCTGTCCACAACACTATGAAAAAGATAGCTATCGCAGTCATTTGGA
TCCCAATGTTCCTTATCTTCTAGATCGTTTTCAATCGATTTCTTTTGAGGATTTACAGACGATTTCAGTCAAACCTGAGA
TGAAGCAGAGGTTGCGGAGATTTATTGATGGTATTTATGATAATTATCTCGGCCTACATTTGAGGTCCAAAAAATTTATT
GATGACTTGTCTAAATGGGGAGATATTATGAAATAG

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.143

100

0.641

Multiple sequence alignment