Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AB1W24_RS17005 Genome accession   NZ_CP160457
Coordinates   3639728..3641149 (-) Length   473 a.a.
NCBI ID   WP_114852117.1    Uniprot ID   -
Organism   Bordetella avium strain 4094     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3634728..3646149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1W24_RS16980 (AB1W24_16980) - 3635350..3635979 (+) 630 WP_012418981.1 LysE family transporter -
  AB1W24_RS16985 (AB1W24_16985) - 3636005..3637612 (+) 1608 WP_012418982.1 peptide chain release factor 3 -
  AB1W24_RS16990 (AB1W24_16990) - 3637649..3638314 (+) 666 WP_012418983.1 hypothetical protein -
  AB1W24_RS16995 (AB1W24_16995) bfr 3638387..3638863 (-) 477 WP_012418984.1 bacterioferritin -
  AB1W24_RS17000 (AB1W24_17000) - 3639389..3639667 (+) 279 WP_039051339.1 (2Fe-2S)-binding protein -
  AB1W24_RS17005 (AB1W24_17005) rpoN/rpoN1 3639728..3641149 (-) 1422 WP_114852117.1 RNA polymerase factor sigma-54 Machinery gene
  AB1W24_RS17010 (AB1W24_17010) - 3641148..3641783 (+) 636 WP_012418987.1 hypothetical protein -
  AB1W24_RS17015 (AB1W24_17015) leuA 3642140..3643849 (+) 1710 WP_012418988.1 2-isopropylmalate synthase -
  AB1W24_RS17020 (AB1W24_17020) - 3643929..3645218 (-) 1290 WP_114852118.1 amidase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 52213.68 Da        Isoelectric Point: 4.8049

>NTDB_id=1021308 AB1W24_RS17005 WP_114852117.1 3639728..3641149(-) (rpoN/rpoN1) [Bordetella avium strain 4094]
MQNIVPMTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAEISLALADNPLLERDENPAEQVDSQREASIESDDSSPE
IETRLEEMPGSGGVYPDEDEPQQARADTLREHLLGQLALTRAGPRDAALVEVLIEELDDNGYLGSPLVEILQWLPPELEI
DEDELRVALSLLQSFDPPGIGARDMADCLLLQLRQPDLTRLPEAANPVILRCAREICVQHLSLLASGNLARLRDVLGVDE
PTLRTAHSLIVRLEPRPGRAWTVPAAEYALPDVLVSKTRQGWQAVLNSAAMPRLQINGLYAQMLANQRETAYAGLSAQLQ
QARWMIRNIEQRFDTILRVSQAIVMHQAAFFSEGPAAMRPLILKDIAAELGLHESTISRATTQKYMLTPFGTLELKYFFG
TGLATDSGNAASATAVQAHIRKMVSEENRAKPLSDSQIMERLASQGIVIARRTVAKYREALRIAPAAVRKAQG

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1021308 AB1W24_RS17005 WP_114852117.1 3639728..3641149(-) (rpoN/rpoN1) [Bordetella avium strain 4094]
ATGCAAAATATTGTACCTATGACTCGTCCTGCTCTAGAACTTCGGCCTGGTCAGCATTTAACTTTGACCCCGCAACTGCA
ACAGTCGATCCGGCTCTTGCAGCTATCCTCATTGGAGCTGGAGGCGGAAATCTCCCTGGCCTTGGCCGACAATCCGTTGC
TGGAGCGCGACGAAAATCCGGCCGAACAGGTGGACTCGCAGCGCGAGGCAAGCATCGAAAGTGATGATTCCTCACCTGAA
ATCGAGACGCGTCTGGAAGAAATGCCGGGTTCGGGCGGCGTCTATCCAGACGAAGATGAGCCGCAACAGGCCCGCGCCGA
CACGCTGCGTGAGCATTTGCTGGGCCAACTGGCGCTGACCCGCGCCGGGCCGCGCGACGCGGCATTGGTTGAGGTGCTCA
TCGAGGAGCTGGACGACAACGGCTATCTGGGCTCGCCGCTGGTGGAAATCTTGCAGTGGCTGCCGCCGGAGCTGGAGATC
GATGAAGACGAGTTGCGTGTCGCTTTGAGCCTGTTGCAGTCTTTCGACCCGCCGGGCATCGGCGCCCGCGATATGGCGGA
CTGTCTGTTGCTGCAATTGCGCCAACCCGATCTGACTCGTTTGCCCGAAGCCGCCAACCCTGTCATCTTGCGTTGTGCGC
GCGAGATCTGCGTGCAGCATCTGTCCTTGCTGGCCTCAGGCAATTTGGCGCGCCTGCGTGACGTGCTGGGGGTGGACGAA
CCGACCTTGCGCACCGCCCACAGCCTTATCGTGCGCCTAGAGCCCCGACCCGGTCGGGCCTGGACCGTCCCGGCGGCCGA
GTATGCGCTGCCTGACGTGCTGGTGAGCAAAACGCGGCAGGGCTGGCAGGCCGTGCTCAATAGCGCCGCCATGCCCCGGC
TACAGATCAATGGGTTGTATGCGCAAATGTTGGCTAACCAGCGAGAAACGGCCTATGCGGGCCTGAGCGCACAGTTGCAG
CAGGCACGCTGGATGATCCGCAATATCGAACAACGATTCGACACGATTCTGCGCGTGTCGCAGGCCATTGTGATGCATCA
GGCGGCGTTTTTCAGTGAAGGTCCGGCTGCCATGCGTCCGCTCATTCTCAAAGACATTGCAGCTGAGTTGGGTTTGCACG
AATCCACGATTTCACGCGCCACAACACAGAAGTACATGCTCACTCCGTTCGGTACGCTGGAGCTCAAATATTTCTTCGGG
ACCGGTCTTGCCACGGATAGCGGGAATGCGGCTTCTGCCACCGCTGTGCAGGCGCATATCCGCAAGATGGTGTCAGAGGA
AAACCGCGCCAAGCCGCTATCTGATAGCCAGATCATGGAGCGATTGGCCAGTCAGGGCATCGTGATTGCCCGGCGTACCG
TGGCCAAGTACCGGGAAGCCTTGCGCATTGCGCCGGCGGCGGTGCGTAAGGCGCAGGGCTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(315-470)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(101-300)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.915

100

0.524

Multiple sequence alignment