Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB1W24_RS11850 Genome accession   NZ_CP160457
Coordinates   2565360..2566718 (-) Length   452 a.a.
NCBI ID   WP_039052141.1    Uniprot ID   -
Organism   Bordetella avium strain 4094     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2560360..2571718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1W24_RS11825 (AB1W24_11825) - 2560574..2560837 (+) 264 WP_012418069.1 type B 50S ribosomal protein L31 -
  AB1W24_RS11830 (AB1W24_11830) - 2560999..2562729 (+) 1731 WP_114852583.1 glycosyltransferase family 39 protein -
  AB1W24_RS11835 (AB1W24_11835) - 2562726..2564117 (+) 1392 WP_012418071.1 MATE family efflux transporter -
  AB1W24_RS11840 (AB1W24_11840) - 2564174..2564380 (-) 207 WP_012418072.1 hypothetical protein -
  AB1W24_RS11845 (AB1W24_11845) - 2564540..2565295 (-) 756 WP_114852584.1 sulfite exporter TauE/SafE family protein -
  AB1W24_RS11850 (AB1W24_11850) radA 2565360..2566718 (-) 1359 WP_039052141.1 DNA repair protein RadA Machinery gene
  AB1W24_RS11855 (AB1W24_11855) - 2566882..2567484 (+) 603 WP_169507435.1 hypothetical protein -
  AB1W24_RS11860 (AB1W24_11860) - 2567501..2568217 (-) 717 WP_114852569.1 SDR family oxidoreductase -
  AB1W24_RS11865 (AB1W24_11865) alr 2568330..2569454 (-) 1125 WP_012418077.1 alanine racemase -
  AB1W24_RS11870 (AB1W24_11870) hpnC 2569555..2570376 (+) 822 WP_012418078.1 squalene synthase HpnC -
  AB1W24_RS11875 (AB1W24_11875) hpnD 2570373..2571236 (+) 864 WP_114852570.1 presqualene diphosphate synthase HpnD -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48038.27 Da        Isoelectric Point: 6.9550

>NTDB_id=1021304 AB1W24_RS11850 WP_039052141.1 2565360..2566718(-) (radA) [Bordetella avium strain 4094]
MAKSRTVYVCAECGGTSLKWQGKCPHCSAWNTLEETVESAAPAAAHRYAPLASASPVRSLADIEARETPRQPTGLDEFDR
VLGGGLVEGAVVLIGGDPGIGKSTLLLQALASLSASVPVLYVTGEESAEQVALRARRLGLQTGAVNLLAEIRLEAIQAAV
SQQKPAVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEGD
THSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHQEQVAGSCVMATQEGTRPMLVEIQALVDTSHAPNP
KRLTVGLESNRLAMLLAVMHRHAGVSTYDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDRPLPKGLITFGEIGLAGEI
RPAPRGQERLREAAKLGFSIALIPKANAPRQPVEGLEIWAVDRLEEALDKLR

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=1021304 AB1W24_RS11850 WP_039052141.1 2565360..2566718(-) (radA) [Bordetella avium strain 4094]
ATGGCTAAATCGCGAACCGTTTATGTATGCGCCGAATGCGGCGGCACCAGTTTGAAATGGCAGGGAAAATGTCCCCATTG
CTCTGCCTGGAATACGCTTGAAGAGACGGTCGAGTCTGCCGCGCCGGCAGCAGCGCACCGCTATGCGCCACTGGCCTCGG
CCAGTCCCGTACGCAGTCTGGCCGATATCGAGGCGCGTGAAACGCCGCGCCAGCCTACCGGTCTGGACGAGTTTGACCGC
GTTCTGGGTGGCGGTCTGGTTGAAGGCGCTGTCGTGCTCATCGGCGGCGATCCGGGCATCGGCAAATCCACCCTGCTCTT
GCAGGCCCTGGCCTCGCTGTCGGCCAGTGTGCCCGTGCTCTATGTCACCGGCGAGGAATCTGCGGAACAGGTCGCTTTGC
GGGCCCGGCGTCTCGGCTTGCAGACCGGTGCGGTCAATCTGTTGGCGGAAATCCGGCTTGAGGCTATCCAGGCTGCTGTT
TCGCAGCAAAAGCCTGCGGTTGCGGTCATTGATTCCATTCAAACACTCTACAGCGGCGAACTGACCGCCGCGCCGGGCTC
GGTATCCCAAGTGCGTGAATGCGCGGCGCAGCTTACACGGCTGGCCAAACAGACCGGTATCGCCATCGTCATGATTGGCC
ATGTCACCAAGGATGGCGCGCTGGCCGGGCCGCGTGTGCTGGAGCATATTGTCGATACCGTGCTGTATTTCGAAGGCGAT
ACGCATTCTTCCTTCCGGCTTGTGCGCGCTTTCAAAAACCGTTTCGGCGCGGTCAATGAGCTGGGGGTCTTCGCCATGAC
GGATCGCGGTCTGCGTGGCGTGGCCAATCCTTCGGCCTTGTTTTTGTCTCAGCACCAGGAGCAGGTTGCAGGTTCCTGCG
TCATGGCGACTCAGGAAGGCACTCGGCCCATGCTGGTGGAGATTCAGGCGCTGGTCGACACCTCCCATGCGCCCAATCCC
AAACGCCTGACGGTTGGCCTTGAAAGCAACCGGCTGGCAATGCTGCTGGCGGTCATGCACCGCCATGCCGGTGTCAGCAC
TTACGACCAGGACGTGTTCGTCAACGCGGTCGGTGGCGTGCGTATCACCGAGCCTGCCGCCGATCTTCCGGTGTTGTTGG
CCATCATGTCGTCCCTGCGTGACAGGCCCTTGCCCAAGGGGCTGATTACTTTCGGCGAAATCGGTTTGGCGGGGGAGATC
CGGCCCGCGCCGCGCGGCCAGGAGCGCTTGCGCGAGGCCGCCAAACTGGGATTCTCTATCGCGCTCATCCCGAAGGCCAA
TGCCCCGCGTCAACCGGTCGAGGGCCTGGAAATCTGGGCGGTTGACCGGCTGGAAGAAGCCTTGGACAAATTGCGTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.496
  radA Streptococcus mitis SK321

47.02

100

0.471
  radA Streptococcus pneumoniae Rx1

46.491

100

0.469
  radA Streptococcus pneumoniae TIGR4

46.491

100

0.469
  radA Streptococcus pneumoniae D39

46.491

100

0.469
  radA Streptococcus pneumoniae R6

46.491

100

0.469
  radA Streptococcus mitis NCTC 12261

46.681

100

0.467

Multiple sequence alignment