Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AB1W24_RS02550 Genome accession   NZ_CP160457
Coordinates   536056..537363 (+) Length   435 a.a.
NCBI ID   WP_039052211.1    Uniprot ID   -
Organism   Bordetella avium strain 4094     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 531056..542363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1W24_RS02525 (AB1W24_02525) - 532886..533290 (+) 405 WP_114851747.1 MOSC N-terminal beta barrel domain-containing protein -
  AB1W24_RS02530 (AB1W24_02530) - 533297..534502 (-) 1206 WP_012416257.1 benzoate/H(+) symporter BenE family transporter -
  AB1W24_RS02535 (AB1W24_02535) - 534499..534753 (-) 255 WP_012416258.1 YfhL family 4Fe-4S dicluster ferredoxin -
  AB1W24_RS02540 (AB1W24_02540) coaD 534805..535308 (-) 504 WP_114851748.1 pantetheine-phosphate adenylyltransferase -
  AB1W24_RS02545 (AB1W24_02545) rsmD 535330..535950 (-) 621 WP_012416260.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB1W24_RS02550 (AB1W24_02550) pilA 536056..537363 (+) 1308 WP_039052211.1 signal recognition particle-docking protein FtsY Machinery gene
  AB1W24_RS02555 (AB1W24_02555) - 537417..539003 (-) 1587 WP_114851749.1 CYTH and CHAD domain-containing protein -
  AB1W24_RS02560 (AB1W24_02560) - 539271..540068 (-) 798 WP_012416263.1 IclR family transcriptional regulator -
  AB1W24_RS02565 (AB1W24_02565) - 540074..540349 (+) 276 WP_127812009.1 hypothetical protein -
  AB1W24_RS02570 (AB1W24_02570) ribBA 540702..541868 (+) 1167 WP_114852718.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 435 a.a.        Molecular weight: 44471.41 Da        Isoelectric Point: 6.5180

>NTDB_id=1021297 AB1W24_RS02550 WP_039052211.1 536056..537363(+) (pilA) [Bordetella avium strain 4094]
MFSFFKKKTPPPAAPATPAPPPEPVAQPAEPVSPPSIAPAAPPVPAVAPEPPVAVPPAAAPPRPPVAAEPVAVQTAAPAS
PAMPAAPAPLVAEPVAAEAVAALAPPSPPAAQAPAPAAPAPEVPAPEVPAPKKASWLSRLKQGLARTGQSIGGIFVGVKV
DENLFEELESALIMADAGIEATDKLLTALRARVKKERIEDPAQVKAALRQLLADHLKPLERQFDLKRAQPLVVMIAGVNG
AGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVIAQDGGDPAAVAFDAVNAGRARAAGVVMIDTA
GRLPTQLHLMEELKKIRRVIGKADAAAPHEVLLVIDGNTGQNALAQIRAFDAAIQLTGLVVTKLDGTAKGGTLAAVAAGS
QGVRPVPVYWIGVGEGLEDLQPFVAEEFASALLAD

Nucleotide


Download         Length: 1308 bp        

>NTDB_id=1021297 AB1W24_RS02550 WP_039052211.1 536056..537363(+) (pilA) [Bordetella avium strain 4094]
ATGTTCAGCTTCTTCAAGAAAAAGACCCCTCCGCCCGCCGCGCCAGCCACGCCCGCGCCGCCGCCGGAGCCCGTCGCTCA
GCCCGCCGAGCCTGTCTCGCCGCCTTCCATCGCGCCCGCGGCGCCGCCTGTCCCGGCGGTGGCCCCCGAGCCGCCTGTGG
CGGTTCCGCCTGCTGCCGCGCCGCCTCGCCCGCCGGTCGCGGCCGAGCCCGTGGCGGTTCAGACTGCTGCGCCGGCCTCG
CCCGCGATGCCTGCGGCACCCGCGCCGCTTGTGGCCGAACCCGTAGCCGCCGAAGCGGTGGCGGCCCTTGCGCCGCCCAG
CCCGCCTGCGGCCCAAGCTCCCGCGCCCGCAGCACCGGCACCCGAAGTCCCCGCCCCCGAAGTTCCTGCACCCAAGAAGG
CCTCCTGGCTCAGCCGGCTCAAGCAGGGCCTGGCCCGCACCGGGCAAAGCATCGGCGGCATTTTTGTTGGCGTCAAAGTC
GATGAAAACCTGTTCGAGGAGCTGGAGTCGGCCCTCATCATGGCCGATGCCGGTATCGAAGCGACCGACAAATTGCTGAC
CGCGCTGCGAGCCCGAGTCAAGAAAGAGCGCATCGAGGACCCTGCGCAGGTCAAGGCCGCTTTGCGCCAGTTGCTGGCCG
ATCACCTCAAACCGCTTGAACGCCAGTTCGACCTCAAGCGTGCGCAGCCGCTGGTCGTGATGATCGCTGGGGTGAACGGC
GCGGGTAAAACCACGTCTATCGGCAAGTTGGCGCATACCTTCCAGCGCCAGGGCGCCAGCGTTTTGCTGGCTGCGGGAGA
CACGTTCCGCGCCGCCGCGCGCGAGCAACTCGTCGAGTGGGGCAGCCGCAACAACGTCACCGTCATCGCCCAAGATGGCG
GAGATCCGGCCGCCGTGGCCTTTGACGCCGTCAACGCCGGTCGCGCACGCGCTGCAGGCGTGGTCATGATCGACACCGCC
GGGCGCCTGCCTACGCAACTGCATTTGATGGAAGAGCTCAAGAAAATCCGTCGCGTTATCGGCAAGGCCGACGCCGCCGC
GCCGCATGAGGTCTTGCTGGTCATCGACGGCAATACCGGGCAGAACGCCCTGGCTCAGATTCGCGCCTTTGATGCGGCCA
TTCAGCTCACCGGCCTGGTCGTCACCAAGCTCGATGGCACCGCCAAGGGCGGCACGCTGGCGGCTGTCGCCGCGGGCAGC
CAGGGCGTGCGCCCTGTGCCGGTTTACTGGATAGGCGTGGGCGAAGGTCTGGAAGACCTCCAACCCTTTGTGGCCGAGGA
GTTTGCCTCGGCCTTGCTGGCAGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(231-433)

SRP54-type protein, helical bundle domain (SRP54_N)

(149-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.64

100

0.487

Multiple sequence alignment