Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AB1H92_RS14625 Genome accession   NZ_CP160452
Coordinates   3020873..3021823 (-) Length   316 a.a.
NCBI ID   WP_115363471.1    Uniprot ID   -
Organism   Sporosarcina pasteurii strain DSM 33     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3015873..3026823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1H92_RS14605 (AB1H92_14615) - 3016491..3017633 (-) 1143 WP_115364181.1 MFS transporter -
  AB1H92_RS14610 (AB1H92_14620) - 3018190..3019146 (-) 957 WP_115364182.1 siderophore ABC transporter substrate-binding protein -
  AB1H92_RS14615 (AB1H92_14625) - 3019172..3019933 (-) 762 WP_115363467.1 ABC transporter ATP-binding protein -
  AB1H92_RS14620 (AB1H92_14630) - 3019930..3020880 (-) 951 WP_115363469.1 iron chelate uptake ABC transporter family permease subunit -
  AB1H92_RS14625 (AB1H92_14635) ceuB 3020873..3021823 (-) 951 WP_115363471.1 ABC transporter permease Machinery gene
  AB1H92_RS14630 (AB1H92_14640) - 3022050..3022901 (-) 852 WP_115363473.1 DUF6612 family protein -
  AB1H92_RS14635 (AB1H92_14645) - 3023127..3024845 (+) 1719 WP_115363475.1 ABC transporter ATP-binding protein -
  AB1H92_RS14640 (AB1H92_14650) hflX 3024974..3026245 (-) 1272 WP_115363477.1 GTPase HflX -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34879.26 Da        Isoelectric Point: 10.1782

>NTDB_id=1021273 AB1H92_RS14625 WP_115363471.1 3020873..3021823(-) (ceuB) [Sporosarcina pasteurii strain DSM 33]
MKKRYLIIALIGFSLLSLFVGVSRITPMDLLDFKSEETEIFLISRLPRLIAIILAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLMFANASTIEKMIIAFAFALAGTLLFMQILDRIKFKDAIFIPLVGLMFGNILSSVTTFFAYRADVI
QNMSAWLQGDFSMIMKGRFELLYISIPVLILAYVYANKFTVAGMGEDFSKNLGLAYRRVVNLGLILVALITTTVVLTVGL
IPFLGLIIPNIISIFHGDHLKKTLPHTALLGAIFLLICDILGRVLIYPYEISISLMVGVIGSGIFLYLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1021273 AB1H92_RS14625 WP_115363471.1 3020873..3021823(-) (ceuB) [Sporosarcina pasteurii strain DSM 33]
ATGAAAAAACGTTATTTGATAATCGCATTGATTGGCTTTTCGCTACTTTCTTTATTCGTAGGGGTGAGCCGAATTACACC
GATGGATCTGCTGGATTTCAAATCAGAAGAAACTGAAATATTTTTAATTAGCCGATTGCCTAGATTGATAGCAATTATTC
TTGCTGGAGCGGGAATGAGTATTGCTGGATTAATTATGCAACAGCTAAGTAGAAATAAATTCGTTTCGCCGACGACAGCT
GGAACGCTCGATGCAACAAGGCTTGGGATATTAGTTTCCATGCTCATGTTTGCAAATGCTTCCACGATTGAGAAGATGAT
CATCGCATTTGCATTTGCGTTAGCCGGCACGCTGTTATTTATGCAAATTCTAGATAGGATTAAATTTAAAGATGCAATTT
TCATTCCGCTCGTCGGGCTCATGTTCGGTAATATTTTATCTTCGGTGACGACATTTTTTGCTTATCGGGCAGATGTCATT
CAAAATATGTCAGCGTGGTTACAAGGCGATTTTTCAATGATTATGAAAGGGCGCTTCGAGCTGCTTTATATAAGTATCCC
GGTTTTAATTCTTGCTTATGTATACGCAAATAAGTTTACAGTTGCAGGGATGGGCGAAGATTTCTCGAAAAATCTTGGAC
TTGCTTATAGAAGAGTAGTTAATCTTGGTTTAATACTTGTAGCGTTAATTACGACAACGGTCGTGTTAACAGTCGGATTA
ATCCCCTTTCTCGGGTTGATTATTCCGAATATTATATCCATATTTCATGGTGATCATTTAAAAAAGACATTGCCGCATAC
CGCATTATTAGGTGCGATATTCCTACTCATTTGTGATATTTTAGGACGGGTACTCATTTACCCGTATGAAATTTCAATTA
GTTTAATGGTAGGAGTTATTGGAAGCGGAATATTCCTCTATTTGTTGTTTAGGAGGAAGGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.994

99.051

0.535

Multiple sequence alignment