Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ABZP31_RS05355 Genome accession   NZ_CP160437
Coordinates   1179023..1179976 (+) Length   317 a.a.
NCBI ID   WP_367156931.1    Uniprot ID   -
Organism   Acinetobacter sp. FL     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1174023..1184976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP31_RS05340 (ABZP31_05340) - 1176100..1177344 (+) 1245 WP_367156930.1 PD-(D/E)XK nuclease family protein -
  ABZP31_RS05345 (ABZP31_05345) - 1177743..1177961 (+) 219 WP_010700166.1 hypothetical protein -
  ABZP31_RS05350 (ABZP31_05350) - 1178086..1178571 (-) 486 WP_005025518.1 Lrp/AsnC family transcriptional regulator -
  ABZP31_RS05355 (ABZP31_05355) ceuB 1179023..1179976 (+) 954 WP_367156931.1 ABC transporter permease Machinery gene
  ABZP31_RS05360 (ABZP31_05360) - 1179969..1180931 (+) 963 WP_248134305.1 iron chelate uptake ABC transporter family permease subunit -
  ABZP31_RS05365 (ABZP31_05365) - 1180916..1181680 (+) 765 WP_248134303.1 ABC transporter ATP-binding protein -
  ABZP31_RS05370 (ABZP31_05370) - 1181690..1182637 (+) 948 WP_111280894.1 siderophore ABC transporter substrate-binding protein -
  ABZP31_RS05375 (ABZP31_05375) - 1182939..1184147 (-) 1209 WP_248134301.1 MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34622.76 Da        Isoelectric Point: 9.6461

>NTDB_id=1021125 ABZP31_RS05355 WP_367156931.1 1179023..1179976(+) (ceuB) [Acinetobacter sp. FL]
MIKRRYLFLLLVPLAVISLFTGVGEMNITGLLTGNIHEWQLFWTSRLPRLMAILVAGAGLSVCGLIMQSLSRNRFVSPTT
AGLYDCARLGVLISIILLPAASIFIKTGFAILVTLAGALVFMSILATLKHRDTVFVPLVGMIFGSIISAFTTFIALQMDL
LQNLAGWLQGDFSTILNGQYELIYLSVPILIVSYFLANRFVLAGIGEDFATNLGLNYKQTLFLGLVLVSVITGVVIVTVG
AIPFLGLIVPNIVSLYLGDNIRKTLSHTAILGALLVLVCDLFGRIVIYPYEVSVSLIMGVLGSVLFLWLLLRRYRYA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1021125 ABZP31_RS05355 WP_367156931.1 1179023..1179976(+) (ceuB) [Acinetobacter sp. FL]
ATGATTAAACGCCGTTACCTGTTTCTTTTGCTTGTTCCTCTTGCTGTTATTTCGTTATTTACAGGTGTGGGCGAAATGAA
TATTACCGGATTACTGACAGGCAATATTCATGAATGGCAATTATTCTGGACCAGCCGTTTACCACGCTTAATGGCCATTT
TAGTTGCAGGTGCAGGGCTGAGTGTTTGTGGGCTGATTATGCAGTCACTCAGCCGGAACCGTTTTGTTTCCCCAACTACA
GCCGGTCTTTATGATTGTGCCCGGTTAGGTGTTCTCATCTCGATTATCCTGTTGCCAGCCGCTTCTATTTTTATTAAAAC
CGGTTTTGCAATTTTAGTTACATTGGCCGGTGCATTGGTTTTTATGAGTATTCTAGCCACACTCAAGCATCGGGATACCG
TTTTTGTTCCTCTGGTTGGTATGATCTTTGGCAGTATCATTTCTGCATTTACGACTTTTATCGCTTTGCAAATGGACTTG
CTACAAAATCTGGCGGGGTGGTTACAGGGTGACTTTTCAACCATTCTAAATGGTCAATATGAGCTGATCTATTTAAGTGT
ACCCATTTTAATAGTGAGTTATTTTCTGGCCAATCGCTTTGTGCTGGCAGGTATCGGGGAAGACTTTGCAACTAATTTAG
GTCTCAATTATAAACAGACCTTATTTTTAGGACTAGTTCTGGTATCTGTCATTACTGGTGTAGTCATCGTCACAGTTGGA
GCTATCCCATTCTTAGGTTTGATTGTTCCCAATATTGTAAGTCTGTATCTCGGAGATAATATCCGTAAGACTTTATCGCA
TACTGCAATTTTAGGGGCTTTACTGGTACTGGTCTGTGATCTGTTTGGACGTATAGTGATTTACCCGTACGAAGTTTCAG
TAAGCCTGATTATGGGTGTACTGGGCAGTGTGCTTTTCTTGTGGCTCTTGCTACGGAGGTACCGTTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.799

98.738

0.502

Multiple sequence alignment