Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABZP20_RS06880 Genome accession   NZ_CP160433
Coordinates   1452758..1454128 (+) Length   456 a.a.
NCBI ID   WP_004626603.1    Uniprot ID   R0ECT7
Organism   Ralstonia sp. CP     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1447758..1459128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP20_RS06860 (ABZP20_06860) rimI 1448255..1448782 (+) 528 WP_004626595.1 ribosomal protein S18-alanine N-acetyltransferase -
  ABZP20_RS06865 (ABZP20_06865) - 1448779..1449573 (+) 795 WP_004626597.1 uracil-DNA glycosylase -
  ABZP20_RS06870 (ABZP20_06870) lplT 1449601..1450917 (-) 1317 WP_004626599.1 lysophospholipid transporter LplT -
  ABZP20_RS06875 (ABZP20_06875) alr 1451565..1452689 (+) 1125 WP_012435428.1 alanine racemase -
  ABZP20_RS06880 (ABZP20_06880) radA 1452758..1454128 (+) 1371 WP_004626603.1 DNA repair protein RadA Machinery gene
  ABZP20_RS06885 (ABZP20_06885) - 1454239..1454718 (+) 480 WP_004626605.1 disulfide bond formation protein B -
  ABZP20_RS06890 (ABZP20_06890) - 1454735..1455261 (+) 527 Protein_1356 DUF523 domain-containing protein -
  ABZP20_RS06895 (ABZP20_06895) - 1455244..1456350 (-) 1107 WP_012435430.1 CaiB/BaiF CoA-transferase family protein -
  ABZP20_RS06900 (ABZP20_06900) - 1456382..1458319 (-) 1938 WP_367126599.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48576.90 Da        Isoelectric Point: 7.0700

>NTDB_id=1021094 ABZP20_RS06880 WP_004626603.1 1452758..1454128(+) (radA) [Ralstonia sp. CP]
MAKSKTVYTCTECGGTAPKWAGQCPNCQQWNTLVETVAQPTSGAGARFQSLASSATVRKLSDIDAVDVPRFSSGIDEFDR
VLGGGLVSGGVVLIGGDPGIGKSTLLLQALSNLSADRRVLYVSGEESGSQIALRARRLGIESPNLALLAEIQLERIQATI
ETEKPEVVVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKRLDVTTILVGHVTKEGALAGPRVLEHIVDTVLYFEGD
THSAYRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTANVPNP
RRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPRGLVVFGEIGLAGEI
RPTPRGQERLKEAAKLGFSIAVIPKSNAPKQAIDGLEVIAVERIEQAIDRVRALEA

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1021094 ABZP20_RS06880 WP_004626603.1 1452758..1454128(+) (radA) [Ralstonia sp. CP]
TTGGCCAAGAGCAAGACGGTCTATACGTGCACCGAATGTGGTGGCACGGCACCGAAGTGGGCGGGGCAGTGCCCGAATTG
CCAGCAGTGGAACACGCTGGTGGAAACCGTCGCGCAGCCGACGTCCGGCGCCGGCGCGCGCTTCCAGTCGCTCGCCTCCA
GCGCGACGGTGCGCAAGCTGTCGGACATCGACGCGGTGGATGTGCCGCGCTTCTCCAGCGGCATCGACGAATTTGACCGC
GTACTGGGCGGTGGCCTGGTCAGCGGCGGTGTTGTGCTGATCGGCGGCGATCCCGGGATCGGCAAATCGACGCTGTTGCT
GCAGGCGCTGTCCAACCTGTCGGCCGATCGGCGGGTGTTGTACGTGAGCGGCGAGGAGTCCGGCTCGCAGATCGCGCTTC
GTGCGCGTCGCCTGGGCATCGAAAGCCCGAACCTTGCGCTGCTGGCGGAGATCCAGCTGGAGCGCATCCAGGCGACGATA
GAAACGGAAAAGCCGGAAGTCGTCGTCATCGATTCGATCCAGACGCTGTATTCCGAGGCGCTGACCTCGGCGCCAGGCTC
CGTGGCCCAGGTGCGGGAATGCGCGGCGCAGTTGACGCGCATTGCCAAGCGGCTGGATGTGACGACCATTCTCGTTGGCC
ATGTGACCAAGGAAGGCGCGCTGGCAGGCCCCCGTGTGCTCGAACACATTGTCGATACGGTGCTGTATTTCGAGGGCGAT
ACGCATTCCGCCTACCGGCTGGTGCGGGCGTTCAAGAACCGTTTCGGCGCCGTCAACGAGCTGGGCGTGTTTGCGATGAC
GGAGCGCGGCCTGCGTGGCGTGGCGAATCCGTCGGCGCTCTTCCTGTCGCAGCACGAACAGGTGGTGCCGGGCTCGTGCG
TGCTGGTGACGCAGGAGGGCACGCGGCCGCTGCTGGTGGAAATCCAGGCGCTGGTGGATACGGCCAACGTGCCGAACCCG
CGCCGCCTGGCGGTGGGCCTGGAGCAGAATCGGCTGGCGATGTTGCTGGCGGTGCTGCACCGCCACGCCGGCATTGCGTG
CTTTGACCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTGAAGATTACCGAGCCCGCGGCGGACTTGGCGGTGCTGTTGG
CGATCCATTCGTCGATGCGCAACAAGGCGCTGCCGCGCGGGCTGGTCGTGTTTGGGGAGATCGGCCTTGCCGGGGAAATC
CGCCCGACGCCGCGCGGTCAGGAGCGGTTGAAGGAAGCGGCCAAGCTGGGCTTCTCGATTGCCGTGATCCCGAAATCCAA
CGCCCCGAAGCAGGCAATCGATGGGCTGGAGGTCATTGCCGTCGAGCGCATTGAACAGGCCATCGATCGGGTGCGGGCGC
TCGAGGCTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-219)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(361-449)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R0ECT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.496
  radA Streptococcus pneumoniae Rx1

46.507

100

0.467
  radA Streptococcus pneumoniae D39

46.507

100

0.467
  radA Streptococcus pneumoniae TIGR4

46.507

100

0.467
  radA Streptococcus pneumoniae R6

46.507

100

0.467
  radA Streptococcus mitis SK321

46.608

100

0.467
  radA Streptococcus mitis NCTC 12261

46.288

100

0.465

Multiple sequence alignment