Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABZP20_RS01310 Genome accession   NZ_CP160433
Coordinates   276063..277574 (-) Length   503 a.a.
NCBI ID   WP_009239182.1    Uniprot ID   -
Organism   Ralstonia sp. CP     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 271063..282574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP20_RS01280 (ABZP20_01280) - 271536..272189 (-) 654 WP_004633400.1 LON peptidase substrate-binding domain-containing protein -
  ABZP20_RS01285 (ABZP20_01285) rapZ 272292..273185 (-) 894 WP_004633398.1 RNase adapter RapZ -
  ABZP20_RS01290 (ABZP20_01290) - 273280..273621 (-) 342 WP_004633396.1 PsiF family protein -
  ABZP20_RS01295 (ABZP20_01295) hprK 273809..274783 (-) 975 WP_004633393.1 HPr(Ser) kinase/phosphatase -
  ABZP20_RS01300 (ABZP20_01300) ptsN 274857..275312 (-) 456 WP_004633390.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ABZP20_RS01305 (ABZP20_01305) raiA 275659..276012 (-) 354 WP_004633388.1 ribosome-associated translation inhibitor RaiA -
  ABZP20_RS01310 (ABZP20_01310) rpoN/rpoN1 276063..277574 (-) 1512 WP_009239182.1 RNA polymerase factor sigma-54 Machinery gene
  ABZP20_RS01315 (ABZP20_01315) lptB 277671..278459 (-) 789 WP_004633384.1 LPS export ABC transporter ATP-binding protein -
  ABZP20_RS01320 (ABZP20_01320) lptA 278490..279077 (-) 588 WP_004633383.1 lipopolysaccharide transport periplasmic protein LptA -
  ABZP20_RS01325 (ABZP20_01325) lptC 279137..279769 (-) 633 WP_004633381.1 LPS export ABC transporter periplasmic protein LptC -
  ABZP20_RS01330 (ABZP20_01330) - 279774..280369 (-) 596 Protein_264 KdsC family phosphatase -
  ABZP20_RS01335 (ABZP20_01335) - 280386..281369 (-) 984 WP_009239180.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55739.11 Da        Isoelectric Point: 4.8510

>NTDB_id=1021083 ABZP20_RS01310 WP_009239182.1 276063..277574(-) (rpoN/rpoN1) [Ralstonia sp. CP]
MKQSLQLRLSQHLALTPQLQQSIRLLQLSTIELQQEVEQALTENPLLERENEWLDTSARIGADGSLNALQSNSATPLPTE
SPPPAPNGGDSSDSSDSSYENGHDNGADFDSDYGSDRSDWSLDDFARKPQSDEDDRAPLQLREAEQSLREFLMEQLAPLK
LSMRDKGLVIFLIESLDDEGYLSGTLDEILADLPPELEVELDELQAALRMLQSFDPPGIGARSAAECLSLQLHRLDSPAK
GLALIIVNQHLELLAARDYTRLKKALCVDEPTLKAAHELIRSLAPFPGHAFGRAEADFVVPDVIVRKTSAGWMAQLNPDV
MPRLRINDMYAQILRSSRGESGAANLQQKLQEARWLIKNIQQRFDTILRVSQAIVERQKSFFTHGEIAMRPLVLREIADT
LGLHESTISRVTTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLVGAEDPKNPLSDSRIAELLGEQGFVV
ARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=1021083 ABZP20_RS01310 WP_009239182.1 276063..277574(-) (rpoN/rpoN1) [Ralstonia sp. CP]
ATGAAACAGTCGCTCCAGCTCCGTCTCTCTCAGCATCTCGCGCTCACGCCGCAGTTGCAGCAATCGATCCGACTGCTGCA
GTTGTCGACCATCGAACTGCAGCAGGAAGTTGAACAGGCCCTGACCGAAAACCCGCTGCTGGAGCGGGAAAACGAGTGGC
TCGACACCTCCGCCCGCATTGGAGCGGACGGCTCCTTGAACGCGCTGCAAAGCAACAGCGCGACGCCCCTGCCCACCGAA
TCGCCTCCGCCCGCACCCAACGGCGGCGACAGCAGCGACAGCTCGGACAGCAGCTACGAAAACGGCCACGACAACGGTGC
CGATTTCGACAGCGATTACGGCTCCGACCGCTCCGACTGGAGCCTCGACGACTTCGCCCGCAAGCCGCAATCCGACGAAG
ACGATCGCGCGCCACTGCAGTTGCGCGAAGCCGAGCAAAGCCTGCGCGAATTCCTCATGGAACAACTCGCGCCGCTCAAG
CTCTCGATGCGCGACAAGGGCCTCGTCATCTTCCTGATCGAATCGCTCGACGACGAAGGTTATCTCTCAGGCACGCTCGA
CGAAATCCTCGCAGACCTGCCGCCCGAACTCGAAGTCGAACTCGACGAACTGCAAGCCGCGCTGCGCATGCTGCAGAGCT
TTGATCCGCCCGGCATTGGCGCGCGCTCAGCGGCCGAATGCCTGTCGTTGCAATTGCATCGGCTCGATTCGCCAGCGAAA
GGGCTGGCGCTCATCATCGTTAATCAGCACCTCGAACTGCTGGCCGCGCGCGACTACACGCGCTTGAAGAAGGCATTGTG
CGTCGACGAACCCACACTGAAAGCTGCGCATGAGCTGATTCGTTCACTGGCACCGTTTCCGGGTCATGCATTCGGCCGCG
CCGAAGCGGATTTCGTGGTGCCCGACGTGATTGTGCGCAAGACAAGCGCAGGCTGGATGGCGCAACTGAACCCCGACGTC
ATGCCGCGGCTGCGCATCAACGACATGTACGCGCAGATCCTGCGCAGCAGCCGCGGTGAATCGGGCGCTGCCAATCTGCA
GCAGAAGCTGCAGGAAGCACGTTGGCTGATCAAGAACATCCAGCAGCGCTTCGATACGATCCTGCGTGTCTCGCAAGCGA
TTGTCGAGCGTCAAAAGAGCTTCTTCACGCACGGCGAAATCGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCCGATACA
CTGGGTCTACACGAGTCCACGATCTCCCGTGTGACAACGAACAAATACATGGCGACCCCGATGGGGACGTTCGAGTTGAA
GTACTTCTTCGGCAGCCATGTATCGACGGAAACCGGCGGGGCCGCGTCGTCCACTGCGATACGCGCGCTCATCAAGCAAC
TTGTAGGAGCCGAAGACCCGAAGAATCCTCTGTCCGATAGCAGAATTGCCGAGCTGTTAGGCGAACAAGGATTCGTGGTG
GCCCGTCGGACGGTGGCCAAATACCGCGAAGCCCTCAAGATCCCTGCAGTGAATTTGCGCAAGTCTTTATAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(141-330)

Sigma-54, DNA binding domain (Sigma54_DBD)

(345-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

92.843

100

0.928

Multiple sequence alignment