Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABK24_RS08135 Genome accession   NZ_AP027713
Coordinates   1676444..1677073 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain PSS-16     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1671444..1682073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK24_RS08115 (VEE25_15540) ycbZ 1671845..1673605 (-) 1761 WP_000156518.1 Lon protease family protein -
  AABK24_RS08120 (VEE25_15550) matP 1673791..1674243 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AABK24_RS08125 (VEE25_15560) ompA 1674319..1675359 (-) 1041 WP_000750416.1 porin OmpA -
  AABK24_RS08130 (VEE25_15580) sulA 1675716..1676225 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AABK24_RS08135 (VEE25_15590) sxy/tfoX 1676444..1677073 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABK24_RS08140 (VEE25_15600) yccS 1677036..1679198 (-) 2163 WP_000875061.1 YccS family putative transporter -
  AABK24_RS08145 (VEE25_15610) yccF 1679208..1679654 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AABK24_RS08150 (VEE25_15620) helD 1679777..1681831 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=102103 AABK24_RS08135 WP_000839153.1 1676444..1677073(+) (sxy/tfoX) [Escherichia coli strain PSS-16]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=102103 AABK24_RS08135 WP_000839153.1 1676444..1677073(+) (sxy/tfoX) [Escherichia coli strain PSS-16]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment