Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABZ559_RS10880 Genome accession   NZ_CP160400
Coordinates   2218434..2219798 (-) Length   454 a.a.
NCBI ID   WP_367007659.1    Uniprot ID   -
Organism   Streptococcus sp. ZY19097     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2213434..2224798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZ559_RS10850 (ABZ559_10850) - 2214596..2215246 (-) 651 WP_367006381.1 hypothetical protein -
  ABZ559_RS10855 (ABZ559_10855) - 2215250..2215696 (-) 447 WP_018376734.1 LytTR family DNA-binding domain-containing protein -
  ABZ559_RS10860 (ABZ559_10860) - 2215835..2216584 (-) 750 WP_367007657.1 TIGR00266 family protein -
  ABZ559_RS10865 (ABZ559_10865) - 2216882..2217319 (-) 438 WP_367006383.1 NUDIX domain-containing protein -
  ABZ559_RS10870 (ABZ559_10870) - 2217322..2217816 (-) 495 WP_367006385.1 carbonic anhydrase -
  ABZ559_RS10875 (ABZ559_10875) - 2218048..2218437 (-) 390 WP_367007658.1 GNAT family N-acetyltransferase -
  ABZ559_RS10880 (ABZ559_10880) radA 2218434..2219798 (-) 1365 WP_367007659.1 DNA repair protein RadA Machinery gene
  ABZ559_RS10885 (ABZ559_10885) - 2219842..2220288 (-) 447 WP_012962568.1 dUTP diphosphatase -
  ABZ559_RS10890 (ABZ559_10890) - 2220381..2221610 (-) 1230 WP_367006387.1 MFS transporter -
  ABZ559_RS10895 (ABZ559_10895) - 2221626..2222828 (-) 1203 WP_367006389.1 MFS transporter -
  ABZ559_RS10900 (ABZ559_10900) - 2223065..2223943 (-) 879 WP_367006390.1 helix-turn-helix domain-containing protein -
  ABZ559_RS10905 (ABZ559_10905) - 2223977..2224744 (-) 768 WP_018376197.1 epoxyqueuosine reductase QueH -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49576.92 Da        Isoelectric Point: 6.6143

>NTDB_id=1020951 ABZ559_RS10880 WP_367007659.1 2218434..2219798(-) (radA) [Streptococcus sp. ZY19097]
MAKKKTTFVCQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSIHYSRTKTGMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINETAKLGFTKVYAPKNALQGIEVPANITVVGVTTVGEVLKKVFHN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=1020951 ABZ559_RS10880 WP_367007659.1 2218434..2219798(-) (radA) [Streptococcus sp. ZY19097]
ATCGCTAAGAAAAAAACAACATTTGTTTGTCAGGAGTGTGGTTATCATTCTCCGAAATATTTGGGACGTTGTCCGAATTG
TTCGTCTTGGACGTCTTTTGTTGAAGAAGTTGAGGTGCAAGAAGTCAAAAATGCGCGTGTTAGTTTGACGGGTGAAAAGA
GCAAACCGACTAAGTTAAAGGATGTTAGCTCGATTCATTATTCACGCACGAAGACTGGCATGGATGAATTTAACCGCGTA
CTTGGTGGCGGTGTGGTGCCAGGTAGTTTGGTGCTTATCGGTGGTGACCCAGGTATCGGAAAATCAACGCTTCTTTTGCA
GGTATCTATTCAACTTGCAGATAAGGGAACAGTTCTTTACGTTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTACGTA
GTGAGCGTCTTGGCGACATTGACAATGAATTTTACCTTTATGCTGAAACCAATATGCAAGCCATTCGCGCACAGATTGAG
CAAATTCAGCCTGACTTTCTCATTATAGACTCAATTCAGACCATTATGAGCCCTGATATTTCTGGGGTTCAAGGGTCGGT
ATCACAAGTACGTGAAGTGACTGCAGAGTTGATGCAACTGGCCAAGACAAATAATATTGCAACCTTTATCGTTGGTCACG
TGACTAAGGAAGGGCAGCTTGCAGGACCGCGCATGCTTGAGCATATGGTGGATACGGTGCTTTATTTTGAAGGGGAACGT
CATCACACTTTCCGTATTCTACGTGCTGTGAAAAATCGTTTTGGTTCAACCAACGAAATCGGCATTTTTGAAATGCAATC
TGGTGGTCTTGTTGAAGTGCTTAATCCGAGCCAAGTTTTCTTAGAAGAACGTTTGGACGGTGCAACGGGGTCAGCTATCG
TGGTTACCATGGAAGGCAGCCGTCCAATTTTGGCTGAGGTGCAGGCACTCGTGACGCCAACTGTTTTTGGAAATGCCAAA
CGCACCACAACGGGTTTAGATTTTAATCGTGTCAGTCTGATTATGGCTGTTTTAGAAAAGCGCTGCGGACTTCTTTTGCA
AAATCAAGATGCTTATTTGAAATCGGCTGGTGGTGTTAAACTTGATGAGCCAGCGATTGATTTGGCAGTAGCGGTAGCCA
TTGCATCAAGCTATAAAGAAAAACCAACAAATCCACAGGAAGCCTTCATCGGTGAAATTGGTTTGACAGGCGAAATTCGT
CGTGTGACACGTATTGAGCAACGTATCAACGAAACGGCAAAACTTGGTTTTACCAAGGTTTACGCTCCCAAAAATGCTCT
GCAAGGTATTGAAGTACCTGCAAATATCACTGTTGTCGGTGTGACGACAGTTGGGGAGGTCTTGAAGAAGGTGTTTCATA
ACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(72-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.053

99.559

0.877
  radA Streptococcus pneumoniae D39

88.053

99.559

0.877
  radA Streptococcus pneumoniae R6

88.053

99.559

0.877
  radA Streptococcus pneumoniae TIGR4

88.053

99.559

0.877
  radA Streptococcus mitis SK321

88.053

99.559

0.877
  radA Streptococcus mitis NCTC 12261

87.832

99.559

0.874
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

99.78

0.612

Multiple sequence alignment