Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   ABZ559_RS09805 Genome accession   NZ_CP160400
Coordinates   1973918..1976032 (+) Length   704 a.a.
NCBI ID   WP_321056197.1    Uniprot ID   -
Organism   Streptococcus sp. ZY19097     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1968918..1981032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZ559_RS09780 (ABZ559_09780) - 1970813..1971376 (-) 564 WP_367006191.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -
  ABZ559_RS09785 (ABZ559_09785) - 1971821..1972006 (-) 186 WP_367007669.1 hypothetical protein -
  ABZ559_RS09790 (ABZ559_09790) - 1971945..1972310 (-) 366 WP_367006193.1 restriction endonuclease subunit S -
  ABZ559_RS09795 (ABZ559_09795) rplJ 1972552..1973055 (+) 504 WP_273415158.1 50S ribosomal protein L10 -
  ABZ559_RS09800 (ABZ559_09800) rplL 1973127..1973495 (+) 369 WP_018376919.1 50S ribosomal protein L7/L12 -
  ABZ559_RS09805 (ABZ559_09805) clpC 1973918..1976032 (+) 2115 WP_321056197.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  ABZ559_RS09810 (ABZ559_09810) - 1976296..1976619 (-) 324 WP_273415151.1 AzlD domain-containing protein -
  ABZ559_RS09815 (ABZ559_09815) - 1976612..1977307 (-) 696 WP_273415150.1 AzlC family ABC transporter permease -
  ABZ559_RS09820 (ABZ559_09820) tsaD 1977541..1978554 (-) 1014 WP_367006195.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ABZ559_RS09825 (ABZ559_09825) rimI 1978555..1978974 (-) 420 WP_026217249.1 ribosomal protein S18-alanine N-acetyltransferase -
  ABZ559_RS09830 (ABZ559_09830) tsaB 1978976..1979665 (-) 690 WP_367006197.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  ABZ559_RS09835 (ABZ559_09835) - 1979916..1980146 (+) 231 WP_018376926.1 DNA-dependent RNA polymerase subunit epsilon -

Sequence

Protein


Download         Length: 704 a.a.        Molecular weight: 77506.41 Da        Isoelectric Point: 4.7986

>NTDB_id=1020948 ABZ559_RS09805 WP_321056197.1 1973918..1976032(+) (clpC) [Streptococcus sp. ZY19097]
MANNNFYGRDPFGNMDDIFNQLMGNMGGYNSENKRYLINGREVTPEEFAQYRQTGKLPGNPDMQQASAATAPKEDGILAK
LGTNLTEQARQNELDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPATIKNKEIISIDIS
GLEAGTQYRGSFEENIQNLVKEVKDAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNEVKVNAPSAQDSFNILMGIRDLYEKHHNVILPDDVLKAAVDFSIQYIPQRSLPDKAIDLIDMTAAHL
AAQNKVTDIKTLEKEIADQKAKQEAAAAKEDYETALNAKVRIEELQKQIDNHTEGQKVTATVNDVAESVERLTGVPVSNM
GASDIERLKEMASRLKGKVIGQNEAVEAVSRAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDSIIR
LDMSEYSDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFK
NTVIIATSNAGFGNEALTGQDDKDKKIMDRIAPYFRPEFLNRFNGIIEFSHLTKEDLNEIVDLMLDEVSKTIAKKGIDLE
VTDAAKAHLIELGYDEAMGVRPLRRVIEQEIRDKITDFYLDHTDVKHLKADITDNVMVISEKQN

Nucleotide


Download         Length: 2115 bp        

>NTDB_id=1020948 ABZ559_RS09805 WP_321056197.1 1973918..1976032(+) (clpC) [Streptococcus sp. ZY19097]
ATGGCTAACAACAACTTTTATGGAAGAGATCCTTTTGGAAATATGGACGACATTTTCAACCAACTCATGGGAAATATGGG
AGGCTACAATTCCGAAAACAAACGTTATTTGATTAACGGACGTGAAGTCACCCCTGAAGAATTTGCTCAATATCGTCAAA
CTGGTAAATTACCAGGTAATCCAGATATGCAACAAGCATCTGCTGCTACTGCTCCTAAAGAAGATGGTATTTTGGCAAAA
CTTGGTACCAACTTGACCGAACAAGCACGCCAAAATGAACTTGACCCAGTCATTGGACGCAACAAAGAAATCCAAGAAAC
TGCTGAAATCTTATCACGCCGTACGAAGAACAATCCTGTTCTTGTCGGTGATGCAGGAGTTGGTAAAACTGCTGTGGTTG
AAGGTTTGGCACAAGCTATTGTCAATGGCGACGTGCCTGCGACGATTAAAAATAAAGAAATCATTTCAATTGATATTTCA
GGGCTTGAAGCGGGTACGCAATACCGCGGTAGCTTTGAAGAAAATATTCAAAATTTGGTTAAGGAAGTCAAAGATGCAGG
TAATATCATCCTCTTCTTTGATGAAATTCATCAAATTTTAGGTGCTGGCTCAACCGGTGGTGACTCTGGTTCCAAAGGCT
TGGCTGACATTCTTAAACCTGCCCTTTCGCGTGGTGAATTAACTGTGATTGGTGCGACTACACAAGACGAATATCGTAAC
ACCATTTTGAAAAATGCTGCGCTAGCACGTCGTTTCAATGAAGTTAAGGTTAATGCACCATCTGCACAGGACAGTTTTAA
TATCCTCATGGGTATTCGTGATTTGTACGAAAAGCACCACAACGTCATTTTGCCGGATGATGTCTTGAAAGCAGCTGTTG
ATTTCTCTATCCAATATATTCCACAACGTAGCTTGCCAGACAAGGCTATTGATTTAATTGACATGACTGCTGCTCACTTA
GCAGCTCAAAATAAGGTCACTGACATTAAGACTTTGGAAAAGGAAATTGCTGATCAAAAAGCTAAACAAGAGGCCGCTGC
TGCTAAAGAGGATTACGAGACTGCACTCAATGCCAAAGTACGGATTGAAGAACTACAAAAACAAATTGATAACCACACAG
AGGGTCAAAAAGTAACTGCTACGGTCAATGACGTGGCAGAATCCGTTGAACGTTTAACTGGTGTGCCTGTTTCCAATATG
GGCGCAAGCGACATTGAGCGTTTGAAAGAAATGGCTAGTCGTTTAAAGGGTAAAGTCATCGGTCAAAACGAAGCTGTTGA
AGCAGTGTCACGCGCCATCCGTCGTAACCGTGCTGGTTTTGATGAGGGTAACCGCCCAATCGGTAGCTTTCTTTTCGTGG
GTCCAACAGGAGTTGGTAAGACCGAATTGGCTAAACAATTAGCACTTGATATGTTTGGTTCCAAAGATTCTATCATTCGT
CTGGATATGTCGGAATACAGCGACCGCACTGCCGTTTCTAAATTAATTGGTACTACCGCTGGTTATGTTGGCTACGATGA
TAATAACAATACTCTTACAGAACGTGTTCGCCGCAACCCTTACTCTATCGTGCTTTTAGATGAAATTGAAAAGGCAGACC
CACAAGTCATCACCCTCCTTCTTCAAGTTTTGGATGATGGTCGTCTAACCGATGGTCAAGGTAACACGATTAACTTCAAA
AATACGGTTATCATTGCTACATCTAATGCTGGATTTGGTAACGAAGCTTTAACTGGTCAAGATGATAAGGATAAGAAAAT
CATGGATCGTATCGCTCCTTACTTCCGTCCAGAATTTCTCAATCGTTTCAACGGTATCATCGAATTCTCTCATTTGACTA
AGGAAGACTTGAATGAAATTGTCGACCTGATGTTAGATGAAGTCAGCAAGACAATTGCTAAGAAAGGTATTGATCTTGAA
GTCACAGACGCTGCCAAAGCTCACTTGATTGAACTAGGGTATGATGAAGCGATGGGGGTTCGTCCACTGCGTCGTGTTAT
CGAACAAGAAATTCGCGATAAAATCACTGACTTCTATCTTGATCACACAGATGTTAAACATCTTAAAGCTGATATTACAG
ACAATGTCATGGTTATTTCTGAAAAGCAAAATTAA

Domains

Predicted by InterproScan.

AAA lid domain (AAA_lid_9)

(262-355)

AAA domain (Cdc48 subfamily) (AAA_2)

(445-604)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(612-683)

ATPase family associated with various cellular activities (AAA) (AAA)

(120-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

49.356

99.29

0.49
  clpE Streptococcus mutans UA159

49.304

91.903

0.453
  clpE Streptococcus pneumoniae Rx1

48.171

93.182

0.449
  clpE Streptococcus pneumoniae D39

48.171

93.182

0.449
  clpE Streptococcus pneumoniae R6

48.171

93.182

0.449
  clpE Streptococcus pneumoniae TIGR4

48.233

92.472

0.446
  clpC Bacillus subtilis subsp. subtilis str. 168

46.44

91.761

0.426
  clpC Streptococcus pneumoniae Rx1

42.161

93.324

0.393
  clpC Streptococcus pneumoniae D39

42.161

93.324

0.393
  clpC Streptococcus pneumoniae TIGR4

42.009

93.324

0.392
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

42.789

89.631

0.384
  clpC Streptococcus mutans UA159

42.628

88.636

0.378
  clpC Streptococcus thermophilus LMG 18311

42.581

88.068

0.375
  clpC Streptococcus thermophilus LMD-9

42.626

87.642

0.374

Multiple sequence alignment